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441
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Answer: Answer: How to make the Input track flat for ChIP-seq
3 months ago by Ian 6.0k
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574
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Answer: Answer: DEG gene list and find common TF from public ChlP-Seq data
7 months ago by Ian 6.0k
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1
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779
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Answer: Answer: macs2 for centromere chip-seq peak calling
13 months ago by Ian 6.0k
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1
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1.0k
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Answer: Answer: How to create bigwig file in galaxy after MACS procedure(Chip Seq)
16 months ago by Ian 6.0k
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1
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1.1k
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Answer: Answer: Upregulated and downregulated genes from ChIP-seq data
16 months ago by Ian 6.0k
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1
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4.8k
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Answer: Answer: How to use output from GeneMark-ES to identify function?
2.5 years ago by Ian 6.0k
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1
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1.1k
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Answer: Answer: Custom genome installation in SigProfileMatrixGenerator
2.9 years ago by Ian 6.0k
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0
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1.2k
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Answer: Answer: Tool/method to calculate the sequence context of variants?
3.0 years ago by Ian 6.0k
7
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59k
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Answer: A: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 3.9 years ago by 43k • written 13.0 years ago by 6.0k
6
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4.8k
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Answer: A: MACS2 Peak Calling : Different number of peaks for each replicate
updated 4.3 years ago by 43k • written 8.3 years ago by 6.0k
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5.0k
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Answer: A: DiffBind - DESeq2 Consensus peakset
updated 4.3 years ago by 43k • written 10.0 years ago by 6.0k
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0
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5.0k
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Answer: A: how to calculate distance between CpG site and TSS?
updated 4.3 years ago by 43k • written 10.0 years ago by 6.0k
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9.2k
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Answer: A: Read depth and Hi-C resolution
updated 4.4 years ago by 43k • written 8.3 years ago by 6.0k
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1
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11k
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Answer: A: Difference between UCSC and Ensembl genomes
updated 4.4 years ago by 43k • written 8.3 years ago by 6.0k
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1
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1.2k
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Answer: A: found non conserved regions between 2 genomes
4.4 years ago by Ian 6.0k
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0
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3.2k
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Answer: A: Program For Filtering Solid Reads
updated 4.4 years ago by 43k • written 11.0 years ago by 6.0k
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1
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20k
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Answer: A: Error when trying to use samtools to convert a sam files to a bam file
updated 4.4 years ago by 43k • written 8.4 years ago by 6.0k
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0
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7.6k
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Answer: A: Doubts related to MACS tool
updated 4.4 years ago by 43k • written 8.4 years ago by 6.0k
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0
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3.8k
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Answer: A: High Kmer Content in middle of the read
updated 4.4 years ago by 43k • written 8.4 years ago by 6.0k
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0
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2.7k
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Answer: A: Differential Peak Calling with Replicates
updated 4.4 years ago by 43k • written 8.4 years ago by 6.0k
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0
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2.5k
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Answer: A: Local alternative to galaxy "Extract Genomic DNA using coordinates" tool
updated 4.4 years ago by 43k • written 8.4 years ago by 6.0k
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1
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2.0k
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Answer: A: Help with PScan and user defined matrices
updated 4.4 years ago by 43k • written 8.5 years ago by 6.0k
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1
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4.8k
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Answer: A: Why some lines of BAM file do not contain NH tag
updated 4.4 years ago by 43k • written 8.5 years ago by 6.0k
9
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2
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16k
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Answer: A: Bowtie 2 - is there a way to discard reads mapping to multiple locations?
updated 4.4 years ago by 43k • written 8.5 years ago by 6.0k
2
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0
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4.0k
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Answer: A: Methylation Bisulfite-Sequencing: Bismark, BS seeker, BSMAP, RMAPBS, MAQ
updated 4.5 years ago by 43k • written 8.6 years ago by 6.0k
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0
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6.8k
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Answer: A: How to use Samtools to remove reads whose mate does not map as expected
updated 4.6 years ago by 43k • written 9.8 years ago by 6.0k
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0
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2.4k
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Answer: A: Paper(S) Discussing Issues In Quality Assessment Of Ngs Data
updated 4.6 years ago by 43k • written 12.1 years ago by 6.0k
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0
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3.8k
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Answer: A: Fine Tune Ngs Downstream Analyses Using Genome Mappability ?
updated 4.6 years ago by 43k • written 12.1 years ago by 6.0k
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0
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2.7k
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Answer: A: What Nucleosome Positioning Software Do You Use?
updated 4.6 years ago by 43k • written 12.1 years ago by 6.0k
1
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0
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17k
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Answer: A: Transcription Factor Binding Site Prediction
updated 4.6 years ago by 43k • written 13.1 years ago by 6.0k
1
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1
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2.3k
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Answer: A: Bincons - Does Anyone Know Where One Can Get A Copy?
updated 4.6 years ago by 43k • written 12.3 years ago by 6.0k
1
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0
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3.3k
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Answer: A: How To Convert Flowgram Data To Bases (Sequences)? (Or Flow Index To Base Seque
updated 4.6 years ago by 43k • written 12.3 years ago by 6.0k
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0
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5.4k
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Answer: A: How To Convert And Filter Scf Format Into Fasta?
updated 4.6 years ago by 43k • written 12.3 years ago by 6.0k
1
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0
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5.4k
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Answer: A: Maximum Read Depth
updated 4.6 years ago by 43k • written 12.3 years ago by 6.0k
0
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0
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4.9k
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Answer: A: Comparing Gene Expression Profiles Using Z-Scores
updated 4.6 years ago by 43k • written 12.3 years ago by 6.0k
0
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0
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2.4k
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Answer: A: Converting Solid To Srf
updated 4.6 years ago by 43k • written 12.4 years ago by 6.0k
1
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1
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3.5k
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Answer: A: Extracting Ucsc Canonical Gene Information
updated 4.6 years ago by 43k • written 12.7 years ago by 6.0k
6
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0
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13k
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Answer: A: Perl To Retrieve Sequences From Ucsc Genome Browser
updated 4.6 years ago by 43k • written 13.2 years ago by 6.0k
4
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0
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6.1k
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Answer: A: Snp Calling Tools And Costs
updated 4.7 years ago by 43k • written 13.3 years ago by 6.0k
1
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0
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17k
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Answer: A: How To Combine Multiple Wig/Bigwig Files Into One
updated 4.7 years ago by 43k • written 13.4 years ago by 6.0k
5
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1
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17k
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Answer: A: Should Samtools Pileup Be Performed On Uniquely Mapped Reads Or All The Reads?
updated 4.7 years ago by 43k • written 13.5 years ago by 6.0k
6
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0
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4.3k
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Answer: A: What Is Your Favorite Wiki Use Case In Bioinformatics?
updated 4.7 years ago by 43k • written 13.5 years ago by 6.0k
1
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0
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5.0k
views
Answer: A: How Best To Add Custom Variation Track To Ucsc Browser?
updated 4.7 years ago by 43k • written 13.5 years ago by 6.0k
3
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1
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11k
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Answer: A: Transfac - Finding Transcription Factor Binding Sites?
updated 4.7 years ago by 43k • written 13.6 years ago by 6.0k
2
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0
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22k
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Answer: A: Conversion Between Hg18 And Hg19
updated 4.7 years ago by 43k • written 13.7 years ago by 6.0k
3
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0
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2.8k
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Answer: A: Which conservation score to use to measure conservation of splice sites?
4.9 years ago by Ian 6.0k
2
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0
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8.5k
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Answer: A: BagFoot TF foot printing
5.1 years ago by Ian 6.0k
1
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0
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9.0k
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Answer: A: How To Convert 454 Data To Sam Format?
updated 5.3 years ago by 43k • written 13.6 years ago by 6.0k
0
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0
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2.5k
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Answer: A: Sorting BAM files from HISAT2 for DEXSeq
5.5 years ago by Ian 6.0k
5
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1
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19k
views
Answer: A: GO analysis: DAVID vs GREAT vs GOrilla
updated 5.6 years ago by 43k • written 8.2 years ago by 6.0k
233 results • Page 1 of 5
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