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0
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0
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417
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Answer: Answer: How to make the Input track flat for ChIP-seq
3 months ago by Ian 6.0k
0
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0
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560
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Answer: Answer: DEG gene list and find common TF from public ChlP-Seq data
6 months ago by Ian 6.0k
13
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6
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2.8k
views
Are there mm39/GRCm39 blacklist regions?
blacklist
updated 8 months ago by 13k • written 23 months ago by 6.0k
1
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1
reply
878
views
How to convert a HG19 Hi-C hic file to HG38?
Hi-C hic
updated 9 months ago by • 0 • written 2.8 years ago by 6.0k
0
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0
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1.1k
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Comment: Comment: Custom genome installation in SigProfileMatrixGenerator
12 months ago by Ian 6.0k
0
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1
reply
759
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Answer: Answer: macs2 for centromere chip-seq peak calling
13 months ago by Ian 6.0k
0
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0
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1.1k
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Comment: Comment: ChIP-seq problem
16 months ago by Ian 6.0k
0
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1
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1.1k
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Comment: Comment: ChIP-seq problem
16 months ago by Ian 6.0k
0
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1
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991
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Answer: Answer: How to create bigwig file in galaxy after MACS procedure(Chip Seq)
16 months ago by Ian 6.0k
1
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1
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1.0k
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Answer: Answer: Upregulated and downregulated genes from ChIP-seq data
16 months ago by Ian 6.0k
0
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0
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2.8k
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Comment: Comment: Are there mm39/GRCm39 blacklist regions?
23 months ago by Ian 6.0k
0
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0
replies
2.8k
views
Comment: Comment: Are there mm39/GRCm39 blacklist regions?
23 months ago by Ian 6.0k
0
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1
reply
1.3k
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Comment: Comment: How to count mapping rates for ChIP-seq?
23 months ago by Ian 6.0k
1
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1
reply
4.7k
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Answer: Answer: How to use output from GeneMark-ES to identify function?
2.4 years ago by Ian 6.0k
1
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3
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1.1k
views
Custom genome installation in SigProfileMatrixGenerator
genome custom SigProfilerMatrixGenerator
12 months ago by Ian 6.0k
1
vote
1
reply
1.1k
views
Answer: Answer: Custom genome installation in SigProfileMatrixGenerator
2.9 years ago by Ian 6.0k
1
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3
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1.2k
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Tool/method to calculate the sequence context of variants?
sequence context variant
3.0 years ago by Ian 6.0k
1
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0
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1.2k
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Answer: Answer: Tool/method to calculate the sequence context of variants?
3.0 years ago by Ian 6.0k
0
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0
replies
1.2k
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Comment: Comment: Tool/method to calculate the sequence context of variants?
3.0 years ago by Ian 6.0k
3
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3
replies
2.2k
views
Comparing input read subtracted ChIP-read profiles using Deeptools v3.4.3
deeptools
3.5 years ago by Ian 6.0k
0
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1
reply
2.2k
views
Comment: C: Comparing input read subtracted ChIP-read profiles using Deeptools2
3.5 years ago by Ian 6.0k
8
votes
2
replies
6.3k
views
Bedtools Intersectbed
bedtools intersect coverage coverage
updated 3.6 years ago by 20 • written 12.4 years ago by 6.0k
7
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0
replies
59k
views
Answer: A: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 3.9 years ago by 43k • written 13.0 years ago by 6.0k
1
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0
replies
59k
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Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 3.9 years ago by 43k • written 13.0 years ago by 6.0k
3
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1
reply
7.5k
views
Tool: Weeder 2.0 - motif discovery tool updated
motif-discovery chip-seq weeder
updated 10 months ago by 43k • written 9.5 years ago by 6.0k
6
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0
replies
4.8k
views
Answer: A: MACS2 Peak Calling : Different number of peaks for each replicate
updated 4.3 years ago by 43k • written 8.2 years ago by 6.0k
0
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0
replies
5.0k
views
Answer: A: DiffBind - DESeq2 Consensus peakset
updated 4.3 years ago by 43k • written 9.9 years ago by 6.0k
0
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0
replies
5.0k
views
Answer: A: how to calculate distance between CpG site and TSS?
updated 4.3 years ago by 43k • written 9.9 years ago by 6.0k
0
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1
reply
24k
views
Comment: C: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
updated 4.3 years ago by 43k • written 10.0 years ago by 6.0k
1
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0
replies
9.1k
views
Answer: A: Read depth and Hi-C resolution
updated 4.3 years ago by 43k • written 8.3 years ago by 6.0k
0
votes
1
reply
10k
views
Answer: A: Difference between UCSC and Ensembl genomes
updated 4.3 years ago by 43k • written 8.3 years ago by 6.0k
0
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0
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24k
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Comment: C: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
updated 4.3 years ago by 43k • written 10.0 years ago by 6.0k
2
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1
reply
1.2k
views
Answer: A: found non conserved regions between 2 genomes
4.3 years ago by Ian 6.0k
2
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0
replies
3.2k
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Answer: A: Program For Filtering Solid Reads
updated 4.3 years ago by 43k • written 11.0 years ago by 6.0k
0
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1
reply
20k
views
Answer: A: Error when trying to use samtools to convert a sam files to a bam file
updated 4.4 years ago by 43k • written 8.4 years ago by 6.0k
0
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0
replies
7.6k
views
Answer: A: Doubts related to MACS tool
updated 4.4 years ago by 43k • written 8.4 years ago by 6.0k
1
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0
replies
3.8k
views
Answer: A: High Kmer Content in middle of the read
updated 4.4 years ago by 43k • written 8.4 years ago by 6.0k
0
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0
replies
2.7k
views
Answer: A: Differential Peak Calling with Replicates
updated 4.4 years ago by 43k • written 8.4 years ago by 6.0k
0
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0
replies
2.5k
views
Answer: A: Local alternative to galaxy "Extract Genomic DNA using coordinates" tool
updated 4.4 years ago by 43k • written 8.4 years ago by 6.0k
0
votes
1
reply
2.0k
views
Answer: A: Help with PScan and user defined matrices
updated 4.4 years ago by 43k • written 8.4 years ago by 6.0k
1
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1
reply
4.7k
views
Answer: A: Why some lines of BAM file do not contain NH tag
updated 4.4 years ago by 43k • written 8.5 years ago by 6.0k
0
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2
replies
16k
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Comment: C: Bowtie 2 - is there a way to discard reads mapping to multiple locations?
updated 4.4 years ago by 43k • written 8.5 years ago by 6.0k
0
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1
reply
16k
views
Comment: C: Bowtie 2 - is there a way to discard reads mapping to multiple locations?
updated 4.4 years ago by 43k • written 8.5 years ago by 6.0k
9
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2
replies
16k
views
Answer: A: Bowtie 2 - is there a way to discard reads mapping to multiple locations?
updated 4.4 years ago by 43k • written 8.5 years ago by 6.0k
2
votes
0
replies
3.9k
views
Answer: A: Methylation Bisulfite-Sequencing: Bismark, BS seeker, BSMAP, RMAPBS, MAQ
updated 4.4 years ago by 43k • written 8.5 years ago by 6.0k
6
votes
3
replies
9.3k
views
Ion Torrent Fastq Format Type?
ion-torrent fastq
updated 4.5 years ago by 5.8k • written 12.0 years ago by 6.0k
1
vote
0
replies
6.7k
views
Answer: A: How to use Samtools to remove reads whose mate does not map as expected
updated 4.5 years ago by 43k • written 9.8 years ago by 6.0k
0
votes
0
replies
2.4k
views
Answer: A: Paper(S) Discussing Issues In Quality Assessment Of Ngs Data
updated 4.6 years ago by 43k • written 12.1 years ago by 6.0k
1
vote
0
replies
3.8k
views
Answer: A: Fine Tune Ngs Downstream Analyses Using Genome Mappability ?
updated 4.6 years ago by 43k • written 12.1 years ago by 6.0k
0
votes
0
replies
2.7k
views
Answer: A: What Nucleosome Positioning Software Do You Use?
updated 4.6 years ago by 43k • written 12.1 years ago by 6.0k
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