This is a test version of Biostars. For the public version, visit https://www.biostars.org.
claudiadast
claudiadast
Reputation:
0
Joined:
8.5 years ago
Last seen:
7.4 years ago
Latest posts by user
0 votes
1 reply
0 views
Comment: C: I have a list of chromosomes, positions, gene ids, and transcript ids (from a ge
written by claudiadast • claudiadast
0 votes
3 replies
1.9K views
I have a list of chromosomes, positions, gene ids, and transcript ids (from a gencode GTF file) - how can I get their corresponding REF and ALT values?
genome gencode
written by claudiadast • claudiadast
0 votes
1 reply
1 view
Comment: C: Using samtools to assess the number of reads that cover a variant position, as w
written by claudiadast • claudiadast
0 votes
3 replies
3.5K views
Using samtools to assess the number of reads that cover a variant position, as well as the ratio of ref/alt among those reads
rna-seq bam samtools allele balance mpileup
written by claudiadast • claudiadast
0 votes
2 replies
1.4K views
Error when running Ensembl VEP: "bigWigToWig does not seem to be in your path"
vep snp ngs ensembl bigwig
updated by Biostar Biostar • written by claudiadast • claudiadast
0 votes
1 reply
1 view
Comment: C: Is there a tool or efficient method of confirming that a FASTQ file and BAM file
written by claudiadast • claudiadast
0 votes
1 reply
1 view
Comment: C: Is there a tool or efficient method of confirming that a FASTQ file and BAM file
written by claudiadast • claudiadast
0 votes
8 replies
2.1K views
Is there a tool or efficient method of confirming that a FASTQ file and BAM file contain the same reads?
genome alignment
updated by GenoMax GenoMax • written by claudiadast • claudiadast
0 votes
1 reply
1 view
Comment: C: Getting "Mismatch between read length and quals length" error in SortSam.
written by claudiadast • claudiadast
0 votes
3 replies
1.8K views
Getting "Mismatch between read length and quals length" error in SortSam.
genome picard sortsam
written by claudiadast • claudiadast
0 votes
0 replies
1 view
Comment: C: SortSam is failing due to Error Parsing SAM file: ("Tag of type i should have si
written by claudiadast • claudiadast
0 votes
5 replies
2.4K views
SortSam is failing due to Error Parsing SAM file: ("Tag of type i should have signed decimal value")
genome sort sam sam picard
updated by Pierre Lindenbaum Pierre Lindenbaum • written by claudiadast • claudiadast
0 votes
0 replies
1.8K views
How to obtain the combined callable regions BED file via BCBio variant-calling pipeline?
bcbio next-gen
written by claudiadast • claudiadast
0 votes
1 reply
3.6K views
Getting samtools cram-to-bam error: [E::cram_get_ref] Failed to populate reference for id?
samtools genome bams crams
written by claudiadast • claudiadast
Latest awards to user
TODO: Awards