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Comment: Comment: How to align fastq files against a reference assembly
2.7 years ago by samuel.a.odonnell ▴ 520
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1.2k
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Comment: Comment: How to compare alignments(SAM/BAM files) aligned to different references?
2.7 years ago by samuel.a.odonnell ▴ 520
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987
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Comment: Comment: Variant calling from 5 MB regions coming from contrasting cultivars
2.8 years ago by samuel.a.odonnell ▴ 520
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1.2k
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Comment: Comment: How to compare alignments(SAM/BAM files) aligned to different references?
2.8 years ago by samuel.a.odonnell ▴ 520
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1
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987
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Comment: Comment: Variant calling from 5 MB regions coming from contrasting cultivars
2.8 years ago by samuel.a.odonnell ▴ 520
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1.5k
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Comment: Comment: De novo genome assembly
2.8 years ago by samuel.a.odonnell ▴ 520
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682
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Comment: Comment: vcf file genotypes
2.8 years ago by samuel.a.odonnell ▴ 520
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1.3k
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Comment: Comment: Genome analysis and improvement
2.8 years ago by samuel.a.odonnell ▴ 520
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1.3k
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Comment: Comment: Genome analysis and improvement
2.8 years ago by samuel.a.odonnell ▴ 520
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1.3k
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Comment: Comment: Genome analysis and improvement
2.8 years ago by samuel.a.odonnell ▴ 520
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764
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Comment: Comment: How to get uniform data yields per barcode in nanopore sequencing
2.8 years ago by samuel.a.odonnell ▴ 520
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1.3k
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Comment: Comment: Generating a dotplot following ragtag scaffolding
2.8 years ago by samuel.a.odonnell ▴ 520
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1.7k
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Comment: Comment: Flye assembly, increased coverage results in decreased N50
2.8 years ago by samuel.a.odonnell ▴ 520
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1.4k
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Comment: Comment: hifiasm assembled contigs alignment to a reference genome sequence
2.8 years ago by samuel.a.odonnell ▴ 520
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1.4k
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Comment: Comment: tool to identify genomic structural variations in completely sequenced prokaryot
2.8 years ago by samuel.a.odonnell ▴ 520
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1.4k
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Comment: Comment: hifiasm assembled contigs alignment to a reference genome sequence
2.8 years ago by samuel.a.odonnell ▴ 520
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1
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1.3k
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Comment: Comment: How to curate the genome assemblies after polishing and scaffolding?
2.8 years ago by samuel.a.odonnell ▴ 520
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2
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1.4k
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Comment: Comment: tool to identify genomic structural variations in completely sequenced prokaryot
2.8 years ago by samuel.a.odonnell ▴ 520
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1
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1.4k
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Comment: Comment: tool to identify genomic structural variations in completely sequenced prokaryot
2.8 years ago by samuel.a.odonnell ▴ 520
1
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1
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1.3k
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Comment: Comment: How to curate the genome assemblies after polishing and scaffolding?
2.9 years ago by samuel.a.odonnell ▴ 520
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1.2k
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Comment: Comment: Polishing PACBIO corrected assembly using ONT and ILLUMINA data (.fastq)
2.9 years ago by samuel.a.odonnell ▴ 520
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1.2k
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Comment: Comment: Polishing PACBIO corrected assembly using ONT and ILLUMINA data (.fastq)
2.9 years ago by samuel.a.odonnell ▴ 520
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998
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Comment: Comment: Scaffolding of bacterial genome assemblies
2.9 years ago by samuel.a.odonnell ▴ 520
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1.7k
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Comment: Comment: LOW BUSCO Score for De novo genome assembly
2.9 years ago by samuel.a.odonnell ▴ 520
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1.1k
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Comment: Comment: Problem creating a reference genome
3.0 years ago by samuel.a.odonnell ▴ 520
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1.5k
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Comment: Comment: RagTag assembly after spades
3.1 years ago by samuel.a.odonnell ▴ 520
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1.5k
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Comment: Comment: Variant calling from comparison of assembled genomes where there is only one r
3.1 years ago by samuel.a.odonnell ▴ 520
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2.2k
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Comment: Comment: Dealing with chimeric assembly contigs
3.1 years ago by samuel.a.odonnell ▴ 520
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1
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2.2k
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Comment: Comment: Dealing with chimeric assembly contigs
3.1 years ago by samuel.a.odonnell ▴ 520
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1.3k
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Comment: C: structural variant discovery from highly mutated viral population using nanopore
3.2 years ago by samuel.a.odonnell ▴ 520
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2.4k
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Comment: C: Basecalling of Nanopore Raw file
3.2 years ago by samuel.a.odonnell ▴ 520
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1
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2.4k
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Comment: C: mummerplot results interpretation
3.2 years ago by samuel.a.odonnell ▴ 520
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2
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2.4k
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Comment: C: mummerplot results interpretation
3.2 years ago by samuel.a.odonnell ▴ 520
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615
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Comment: C: anyway to save contaminated samples?
3.3 years ago by samuel.a.odonnell ▴ 520
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920
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Comment: C: Assembly based structural variants call from bacterial genome
3.3 years ago by samuel.a.odonnell ▴ 520
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1
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920
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Comment: C: Assembly based structural variants call from bacterial genome
3.3 years ago by samuel.a.odonnell ▴ 520
1
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677
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Comment: C: Strategy for sequencing genomes of nascent polyploid species
3.3 years ago by samuel.a.odonnell ▴ 520
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961
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Comment: C: structural variants from mauve
3.4 years ago by samuel.a.odonnell ▴ 520
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1.0k
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Comment: C: Building pangenome reference
3.4 years ago by samuel.a.odonnell ▴ 520
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2.6k
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Comment: C: False positives in manta structural variant calling
3.4 years ago by samuel.a.odonnell ▴ 520
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2.6k
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Comment: C: Combining nanopore libraries
3.4 years ago by samuel.a.odonnell ▴ 520
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5.1k
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Comment: C: extract single contig from fasta file based on name?
3.4 years ago by samuel.a.odonnell ▴ 520
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666
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Comment: C: Haplotyping Using Whatshap
3.4 years ago by samuel.a.odonnell ▴ 520
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725
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Comment: C: SV detect method based on genome assemble
3.5 years ago by samuel.a.odonnell ▴ 520
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1.4k
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Comment: C: Canu diploid assembly with nanopore reads
3.6 years ago by samuel.a.odonnell ▴ 520
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5.1k
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Comment: C: extract single contig from fasta file based on name?
3.6 years ago by samuel.a.odonnell ▴ 520
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1
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642
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Comment: C: number of heterozygous and homozygous SNPs across lineages
3.6 years ago by samuel.a.odonnell ▴ 520
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2.7k
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Comment: A: Sequence Header Convertion from Nanopore to PacBio
6.0 years ago by samuel.a.odonnell ▴ 520
98 results • Page 2 of 2
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