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comments
0
votes
0
replies
506
views
Comment:
Comment: Porechop demulitplexing of nanopore sequencing data and barcode bins for each sa
5 months ago by
samuel.a.odonnell
▴ 510
1
vote
0
replies
954
views
Comment:
Comment: Short Read Data Genome Assembly
6 months ago by
samuel.a.odonnell
▴ 510
1
vote
1
reply
956
views
Comment:
Comment: The GATK "The given bam input has no sample names." error
7 months ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
774
views
Comment:
Comment: investigate the inversions in comparison of assembled genome with reference geno
7 months ago by
samuel.a.odonnell
▴ 510
0
votes
1
reply
774
views
Comment:
Comment: investigate the inversions in comparison of assembled genome with reference geno
7 months ago by
samuel.a.odonnell
▴ 510
0
votes
1
reply
500
views
Comment:
Comment: Expect heterozygous variant from reads
8 months ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
843
views
Comment:
Comment: vg: Mapping fewer reads to a genome graph than a linear reference
10 months ago by
samuel.a.odonnell
▴ 510
1
vote
1
reply
1.8k
views
Comment:
Comment: How to rerun Guppy Basecalling (with both fast5_pass and fast5_fail)
11 months ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
947
views
Comment:
Comment: MissAssembly Correction
13 months ago by
samuel.a.odonnell
▴ 510
0
votes
1
reply
947
views
Comment:
Comment: MissAssembly Correction
13 months ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
511
views
Answer:
Answer: scaffold assembly inro chromosomal assembly using reference genome
14 months ago by
samuel.a.odonnell
▴ 510
2
votes
1
reply
1.0k
views
Comment:
Comment: Problem with NextDenovo fungal assembly
14 months ago by
samuel.a.odonnell
▴ 510
1
vote
0
replies
433
views
Comment:
Comment: Tools for annotating predicted genes?
14 months ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
1.3k
views
Comment:
Comment: minimap2, before or after assembly?
15 months ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
791
views
Comment:
Comment: Filtering mitochondrion reads from FastQ files
16 months ago by
samuel.a.odonnell
▴ 510
1
vote
0
replies
1.1k
views
Comment:
Comment: How to fix long read from ONT : ERROR: Invalid char while reading fastq.gz file
16 months ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
1.4k
views
Comment:
Comment: Low basecalling of raw ONT data
17 months ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
911
views
Comment:
Comment: Assembly size is double the genome size despite specifying --genome-size in flye
17 months ago by
samuel.a.odonnell
▴ 510
2
votes
1
reply
632
views
Comment:
Comment: Why SNPs with read depth > 100 or 200 were removed?
17 months ago by
samuel.a.odonnell
▴ 510
2
votes
0
replies
822
views
Comment:
Comment: Help with geom_dotplot() script
18 months ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
718
views
Comment:
Comment: How can I make a reference genome from multiple genomes?
18 months ago by
samuel.a.odonnell
▴ 510
4
votes
1
reply
531
views
assembly based phylogeny
whole-genome
phylogenetics
assembly
updated 18 months ago by
shelkmike
★ 1.2k • written 18 months ago by
samuel.a.odonnell
▴ 510
2
votes
1
reply
772
views
Answer:
Answer: How do I input one fasta file for an entire reference genome?
19 months ago by
samuel.a.odonnell
▴ 510
1
vote
1
reply
528
views
Comment:
Comment: Unexpected coverage across genome
19 months ago by
samuel.a.odonnell
▴ 510
1
vote
0
replies
777
views
Comment:
Comment: ONT multiplexing not generating equal amount of data for each barcodes
19 months ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
910
views
Comment:
Comment: Convert fasta to Fastq/bam
19 months ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
863
views
Comment:
Comment: Variant calling for scaffold genome
22 months ago by
samuel.a.odonnell
▴ 510
1
vote
1
reply
844
views
Comment:
Comment: A question about SPAdes
22 months ago by
samuel.a.odonnell
▴ 510
0
votes
1
reply
921
views
Comment:
Comment: Method to fill N gaps with de novo assembly
22 months ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
561
views
Comment:
Comment: comparing and aligning 2 de novo genomes
22 months ago by
samuel.a.odonnell
▴ 510
0
votes
1
reply
561
views
Comment:
Comment: comparing and aligning 2 de novo genomes
22 months ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
956
views
Comment:
Comment: Incomplete TE identification by repeatmasker
22 months ago by
samuel.a.odonnell
▴ 510
0
votes
1
reply
956
views
Comment:
Comment: Incomplete TE identification by repeatmasker
22 months ago by
samuel.a.odonnell
▴ 510
0
votes
1
reply
956
views
Comment:
Comment: Incomplete TE identification by repeatmasker
22 months ago by
samuel.a.odonnell
▴ 510
1
vote
0
replies
907
views
Answer:
Answer: "moving average" function for "coverage" signal in bed files?
22 months ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
524
views
Comment:
Comment: Correct de novo assembly workflow and mapping
22 months ago by
samuel.a.odonnell
▴ 510
0
votes
1
reply
657
views
Comment:
Comment: Considering two and more variation in polyploidy
23 months ago by
samuel.a.odonnell
▴ 510
0
votes
1
reply
657
views
Comment:
Comment: Considering two and more variation in polyploidy
23 months ago by
samuel.a.odonnell
▴ 510
2
votes
1
reply
875
views
Comment:
Comment: Why he/she disabled the base calling in Guppy?
23 months ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
1.6k
views
Comment:
Comment: Re-assembly assembled genomes
2.1 years ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
384
views
Detecting novel material inside repeat array
genome
repeat
alignment
2.4 years ago by
samuel.a.odonnell
▴ 510
0
votes
1
reply
1.1k
views
Comment:
Comment: How are two alleles typically represented in a whole genome sequence?
2.5 years ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
567
views
Comment:
Comment: Structural variation nomenclature ambiguity
2.5 years ago by
samuel.a.odonnell
▴ 510
0
votes
0
replies
1.9k
views
Comment:
Comment: Beginner problems: Aligning "genomes" that come in contigs
2.5 years ago by
samuel.a.odonnell
▴ 510
0
votes
1
reply
1.9k
views
Comment:
Comment: Beginner problems: Aligning "genomes" that come in contigs
2.5 years ago by
samuel.a.odonnell
▴ 510
1
vote
0
replies
3.3k
views
Comment:
Comment: large number of contigs after assembly
2.5 years ago by
samuel.a.odonnell
▴ 510
0
votes
1
reply
3.3k
views
Comment:
Comment: large number of contigs after assembly
2.5 years ago by
samuel.a.odonnell
▴ 510
0
votes
1
reply
3.3k
views
Comment:
Comment: large number of contigs after assembly
2.6 years ago by
samuel.a.odonnell
▴ 510
0
votes
1
reply
3.3k
views
Comment:
Comment: large number of contigs after assembly
2.6 years ago by
samuel.a.odonnell
▴ 510
1
vote
0
replies
3.3k
views
Comment:
Comment: large number of contigs after assembly
2.6 years ago by
samuel.a.odonnell
▴ 510
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