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How to generate a .raw file from vcf in plink
plink vcf
updated 13 months ago by 43k • written 21 months ago by ▴ 80
1
vote
1
reply
528
views
Interpretation of results obtained in GWAS analysis using MLMM
effect gwas snp mlmm
updated 16 months ago by ▴ 330 • written 17 months ago by ▴ 80
0
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0
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343
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Survival analysis with RNA-Seq and several cancer subtypes
survival expression rna-seq
17 months ago by antmantras ▴ 80
3
votes
2
replies
1.5k
views
Phenotype data normalization prior to GWAS
normalization gwas phenotype
18 months ago by antmantras ▴ 80
2
votes
4
replies
1.4k
views
Question about edgeR GLM funcionality
edger dge glm rna-seq
18 months ago by antmantras ▴ 80
0
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0
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438
views
Does read group id need to be unique between multiple bam files?
bam variant-calling snp readgroup
22 months ago by antmantras ▴ 80
0
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2
replies
777
views
Expected runtimes for GATK variant calling?
snp variant calling gatk
22 months ago by antmantras ▴ 80
5
votes
3
replies
623
views
Strange alignments results
coverage mem bwa bowtie2 alignment
updated 23 months ago by 82k • written 23 months ago by ▴ 80
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0
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416
views
Combining own and public samples from different sequencing strategies to perform GWAS
gwas gbs wgs
23 months ago by antmantras ▴ 80
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0
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421
views
Model/Variable selection in cox regression
survival-analysis gene-expression model-selection cox-regression
2.1 years ago by antmantras ▴ 80
3
votes
5
replies
1.7k
views
Hardware requirements for de novo assembly of a small plant genome (<1 Gb) with PacBio HiFi
sequencing genome assembly plant de-novo
updated 2.3 years ago by 6.4k • written 2.3 years ago by ▴ 80
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0
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364
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Survival analysis of several genes with more than 3 levels
tcga cancer survival
2.3 years ago by antmantras ▴ 80
0
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2
replies
1.5k
views
Batch effects and differential expression analysis on TCGA data for cancer subtypes
RNA-Seq TCGA batch
3.0 years ago by antmantras ▴ 80
0
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0
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620
views
CPM or TPM values as discretization method input
RNA-Seq discretization TPM CPM
3.1 years ago by antmantras ▴ 80
3
votes
3
replies
3.0k
views
How to retrieve paired samples of RNASeq data from TCGA? (Normal vs Tumor)
rna-seq tcga cancer
updated 5.8 years ago by 88k • written 5.8 years ago by ▴ 80
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0
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1.7k
views
Minfi bumphunter -value column
R minfi bumphunter
7.0 years ago by antmantras ▴ 80
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