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929
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How to generate a .raw file from vcf in plink
plink vcf
updated 13 months ago by 43k • written 21 months ago by ▴ 80
1
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1
reply
523
views
Interpretation of results obtained in GWAS analysis using MLMM
effect gwas snp mlmm
updated 16 months ago by ▴ 330 • written 16 months ago by ▴ 80
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0
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341
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Survival analysis with RNA-Seq and several cancer subtypes
survival expression rna-seq
17 months ago by antmantras ▴ 80
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0
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1.4k
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Comment: Comment: Phenotype data normalization prior to GWAS
17 months ago by antmantras ▴ 80
3
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2
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1.4k
views
Phenotype data normalization prior to GWAS
normalization gwas phenotype
17 months ago by antmantras ▴ 80
0
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0
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1.4k
views
Comment: Comment: Question about edgeR GLM funcionality
18 months ago by antmantras ▴ 80
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1
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1.4k
views
Comment: Comment: Question about edgeR GLM funcionality
18 months ago by antmantras ▴ 80
2
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4
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1.4k
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Question about edgeR GLM funcionality
edger dge glm rna-seq
18 months ago by antmantras ▴ 80
0
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1
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769
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Comment: Comment: GO analysis where I can set by own set of genes to search against
19 months ago by antmantras ▴ 80
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0
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727
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Answer: Answer: Microarray DEG analysis visualisation
19 months ago by antmantras ▴ 80
1
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1
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1.5k
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Comment: Comment: Fasta headers column spilt or selection
19 months ago by antmantras ▴ 80
1
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2
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1.5k
views
Answer: Answer: Fasta headers column spilt or selection
19 months ago by antmantras ▴ 80
1
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1
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2.1k
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Comment: Comment: BWA index - What will be produced
22 months ago by antmantras ▴ 80
2
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1
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2.1k
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Answer: Answer: BWA index - What will be produced
22 months ago by antmantras ▴ 80
0
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0
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434
views
Does read group id need to be unique between multiple bam files?
bam variant-calling snp readgroup
22 months ago by antmantras ▴ 80
0
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1
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601
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Answer: Answer: Bowtie2 penality scoring
22 months ago by antmantras ▴ 80
0
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0
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758
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Comment: Comment: Expected runtimes for GATK variant calling?
22 months ago by antmantras ▴ 80
0
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2
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758
views
Expected runtimes for GATK variant calling?
snp variant calling gatk
22 months ago by antmantras ▴ 80
0
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1
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617
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Comment: Comment: Strange alignments results
22 months ago by antmantras ▴ 80
5
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3
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617
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Strange alignments results
coverage mem bwa bowtie2 alignment
updated 22 months ago by 82k • written 22 months ago by ▴ 80
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411
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Combining own and public samples from different sequencing strategies to perform GWAS
gwas gbs wgs
23 months ago by antmantras ▴ 80
0
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0
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406
views
Model/Variable selection in cox regression
survival-analysis gene-expression model-selection cox-regression
2.1 years ago by antmantras ▴ 80
0
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1
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1.6k
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Comment: Comment: Hardware requirements for de novo assembly of a small plant genome (<1 Gb) with
2.3 years ago by antmantras ▴ 80
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0
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1.6k
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Comment: Comment: Hardware requirements for de novo assembly of a small plant genome (<1 Gb) with
2.3 years ago by antmantras ▴ 80
3
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5
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1.6k
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Hardware requirements for de novo assembly of a small plant genome (<1 Gb) with PacBio HiFi
sequencing genome assembly plant de-novo
updated 2.2 years ago by 6.4k • written 2.3 years ago by ▴ 80
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0
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362
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Survival analysis of several genes with more than 3 levels
tcga cancer survival
2.3 years ago by antmantras ▴ 80
0
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0
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1.5k
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Comment: Comment: Batch effects and differential expression analysis on TCGA data for cancer subty
3.0 years ago by antmantras ▴ 80
0
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2
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1.5k
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Batch effects and differential expression analysis on TCGA data for cancer subtypes
RNA-Seq TCGA batch
3.0 years ago by antmantras ▴ 80
0
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0
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615
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CPM or TPM values as discretization method input
RNA-Seq discretization TPM CPM
3.1 years ago by antmantras ▴ 80
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1
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3.0k
views
Comment: C: How to retrieve paired samples of RNASeq data from TCGA? (Normal vs Tumor)
5.8 years ago by antmantras ▴ 80
3
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3
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3.0k
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How to retrieve paired samples of RNASeq data from TCGA? (Normal vs Tumor)
rna-seq tcga cancer
updated 5.8 years ago by 87k • written 5.8 years ago by ▴ 80
0
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0
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1.7k
views
Minfi bumphunter -value column
R minfi bumphunter
7.0 years ago by antmantras ▴ 80
32 results • Page 1 of 1
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