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questions
3
votes
5
replies
1.5k
views
seqboot ERROR: sequences out of alignment (SOLVED)
alignment
sequence
protein
bootstrap
phylogenetics
updated 11 months ago by
ATpoint
82k • written 11 months ago by
mcsimenc
▴ 20
0
votes
0
replies
561
views
snpEff problems adding regulatory regions to database
snp
snpEff
gwas
TFBS
21 months ago by
mcsimenc
▴ 20
1
vote
1
reply
475
views
GWAS - need software that outputs effect size and se or variance
GWAS
updated 22 months ago by
Helix
▴ 20 • written 22 months ago by
mcsimenc
▴ 20
2
votes
4
replies
869
views
DESeq2 batch effects with nonuniform design matrix
DESeqDataSet
DESeq2
batch
updated 12 months ago by
Ram
44k • written 24 months ago by
mcsimenc
▴ 20
0
votes
3
replies
836
views
DESeq2 use of factors for colData
DESeq2
expression
differential
updated 24 months ago by
swbarnes2
14k • written 24 months ago by
mcsimenc
▴ 20
0
votes
1
reply
2.8k
views
DeepTools plotProfile y axis units?
deeptools
plotprofile
plotheatmap
updated 3.5 years ago by
Devon Ryan
104k • written 3.5 years ago by
mcsimenc
▴ 20
1
vote
1
reply
1.9k
views
cellranger: min gene count and UMI/cell filter?
10x genomics
cellranger
qc
scRNA-seq
updated 3.6 years ago by
swbarnes2
14k • written 3.6 years ago by
mcsimenc
▴ 20
0
votes
1
reply
1.3k
views
Interpreting jmodeltest2 using transposon sequences results
jmodeltest2
transposon
long terminal repeats
model
updated 3.9 years ago by
liangna19911314
• 0 • written 7.0 years ago by
mcsimenc
▴ 20
0
votes
2
replies
919
views
Tool or DB to find candidate transcription factors from promoter sequences? Arabidopsis
transcription factor
promoter
database
updated 4.1 years ago by
Alex Reynolds
35k • written 4.1 years ago by
mcsimenc
▴ 20
0
votes
0
replies
894
views
NCBI's tbl2asn for sequin files for GenBank submissions - what else does the program do in the system?
GenBank
tbl2asn
MacOS
sandboxing
5.2 years ago by
mcsimenc
▴ 20
6
votes
2
replies
2.6k
views
Where can I find GMAP? All links appear dead. Was the project abandoned?
gmap
gsnap
alignment
software availability
updated 2.1 years ago by
GenoMax
142k • written 5.6 years ago by
mcsimenc
▴ 20
0
votes
0
replies
1.6k
views
PASTEC repeat classification software (part of REPET) help needed
repeat classification
repet
pastec
parallel
torque
7.4 years ago by
mcsimenc
▴ 20
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