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samuel.lipworth
samuel.lipworth
Reputation:
30
Joined:
9.7 years ago
Last seen:
7.5 years ago
Location:
University of Oxford

Academic junior doctor in Oxford - attempting to learn bioinformatics for microbiology.

Latest posts by user
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Comment: C: Phylogenetic tree from denovo assemblies
written by samuel.lipworth • samuel.lipworth
1 vote
4 replies
3.9K views
Phylogenetic tree from denovo assemblies
wgs phylogeny
updated by Sergey Naumenko Sergey Naumenko • written by samuel.lipworth • samuel.lipworth
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2 replies
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Comment: C: ENA bulk download all fastq files in study
written by samuel.lipworth • samuel.lipworth
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Answer: A: ENA bulk download all fastq files in study
written by samuel.lipworth • samuel.lipworth
0 votes
5 replies
11K views
ENA bulk download all fastq files in study
ena fastq
written by samuel.lipworth • samuel.lipworth
0 votes
1 reply
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Answer: A: change specific bases in a fasta file
written by samuel.lipworth • samuel.lipworth
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0 replies
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Comment: C: change specific bases in a fasta file
written by samuel.lipworth • samuel.lipworth
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1 reply
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Comment: A: change specific bases in a fasta file
written by samuel.lipworth • samuel.lipworth
0 votes
12 replies
9.1K views
change specific bases in a fasta file
fasta biopython
updated by erdagnese • erdagnese • written by samuel.lipworth • samuel.lipworth
0 votes
1 reply
1.7K views
vcf-consensus wrong bases
vcf fasta snp
written by samuel.lipworth • samuel.lipworth
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1 reply
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Answer: A: vcf at variable sites only
written by samuel.lipworth • samuel.lipworth
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2 replies
2.0K views
vcf at variable sites only
vcf
written by samuel.lipworth • samuel.lipworth
0 votes
1 reply
1.1K views
convert between vcf types
vcf
updated by Pierre Lindenbaum Pierre Lindenbaum • written by samuel.lipworth • samuel.lipworth
0 votes
1 reply
1.6K views
list variants from concatonate snp alignment
snp python phylogeny
updated by Pierre Lindenbaum Pierre Lindenbaum • written by samuel.lipworth • samuel.lipworth
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1 reply
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Comment: C: Clusters of max SNP distance
written by samuel.lipworth • samuel.lipworth
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3 replies
3.0K views
Clusters of max SNP distance
r snp
updated by Petr Ponomarenko Petr Ponomarenko • written by samuel.lipworth • samuel.lipworth
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1 reply
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Comment: C: Analyse VCF file to find snps common to all samples in lineage
written by samuel.lipworth • samuel.lipworth
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4 replies
2.7K views
Analyse VCF file to find snps common to all samples in lineage
snp vcf
updated by Pierre Lindenbaum Pierre Lindenbaum • written by samuel.lipworth • samuel.lipworth
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1 reply
1.8K views
VelvetK long Kmers
velvet velvetoptimiser denovo assembly
written by samuel.lipworth • samuel.lipworth
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0 replies
1.5K views
Matrix plot of deleted positions vs reference genome
dna plot
written by samuel.lipworth • samuel.lipworth
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