vcf-consensus wrong bases
Hi I have a vcf file from which I am calling: vcf-consensus filtered.vcf.gz < NC000962.fasta > test.fasta
There are bases in the new test.fasta which are different from the reference but not called as SNPs in filtered.vcf.gz - how can this be!? The VCF file is correct but I don't understand why there are a whole load of made up snps in the consensus fasta?
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samuel.lipworth •
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