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Comment: Comment: counting reads in a fastq file using a refrence fasta file
15 months ago by vaslanzadeh ▴ 20
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2
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714
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counting reads in a fastq file using a refrence fasta file
fastq alignment readCount
15 months ago by vaslanzadeh ▴ 20
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2
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3.9k
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Interpreting trim_galore report
RNA-Seq
updated 3.1 years ago by 141k • written 6.7 years ago by ▴ 20
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536
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Comment: C: Amplicon variant calling from PacBio CCS reads
3.2 years ago by vaslanzadeh ▴ 20
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2
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536
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Amplicon variant calling from PacBio CCS reads
sequencing SNP
updated 3.2 years ago by 141k • written 3.2 years ago by ▴ 20
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5
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1.3k
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Pysam prints wrong outputs
alignment RNA-Seq
updated 4.9 years ago by 20 • written 5.1 years ago by ▴ 20
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1.3k
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Comment: C: Pysam prints wrong outputs
5.1 years ago by vaslanzadeh ▴ 20
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1.3k
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Comment: C: Pysam prints wrong outputs
updated 5.1 years ago by 10k • written 5.1 years ago by ▴ 20
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1
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24k
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Comment: C: Position Of Mismatches Per Read From A Sam/Bam File
6.5 years ago by vaslanzadeh ▴ 20
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1
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1.9k
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low mapping rate, finding possible source of contamination
RNA-Seq genome alignment blast
6.6 years ago by vaslanzadeh ▴ 20
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1
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10.0k
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Comment: A: Identify sequencing machine based on fastq-file/reads
6.8 years ago by vaslanzadeh ▴ 20
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3.0k
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Comment: C: How to count the reads that overlap with 3' splice sites or 5' splice sites?
7.9 years ago by vaslanzadeh ▴ 20
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3.0k
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Comment: C: How to count the reads that overlap with 3' splice sites or 5' splice sites?
7.9 years ago by vaslanzadeh ▴ 20
2
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4
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3.0k
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How to count the reads that overlap with 3' splice sites or 5' splice sites?
alignment RNA-Seq rna-seq
7.9 years ago by vaslanzadeh ▴ 20
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