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Comment: C: VCF file phasing by SHAPEIT
3.9 years ago by miaowzai ▴ 390
1
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0
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5.6k
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Answer: A: Error while downloading data from database[EGA]
4.6 years ago by miaowzai ▴ 390
1
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1
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15k
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Comment: C: Error in while (change > conv) { : missing value where TRUE/FALSE needed
4.8 years ago by miaowzai ▴ 390
10
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6
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9.3k
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how to switch REF and ALT alleles in VCF files if the REF is incorrect according to RefSeq?
VCF REF allele ALT allele PLINK
updated 4.8 years ago by ★ 9.4k • written 7.0 years ago by ▴ 390
1
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1
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6.5k
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Answer: C: VCF file phasing by SHAPEIT
5.0 years ago by miaowzai ▴ 390
2
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1
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5.0k
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Answer: A: BaseQRankSum and FS
5.4 years ago by miaowzai ▴ 390
0
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1
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3.1k
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Comment: C: ComBat correction with one batch containing only one sample - keep or remove?
5.5 years ago by miaowzai ▴ 390
0
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0
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844
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Strange order of multi-allelic site in VCF file
VCF
5.5 years ago by miaowzai ▴ 390
0
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0
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5.6k
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Comment: C: Error while downloading data from database[EGA]
5.8 years ago by miaowzai ▴ 390
0
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0
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3.1k
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Comment: C: relationship between DP and variant call quality
5.8 years ago by miaowzai ▴ 390
2
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12
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3.1k
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relationship between DP and variant call quality
coverage read depth DP variant quality
updated 5.8 years ago by 16k • written 5.8 years ago by ▴ 390
0
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0
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3.1k
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Comment: C: relationship between DP and variant call quality
5.8 years ago by miaowzai ▴ 390
0
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0
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3.1k
views
Comment: C: relationship between DP and variant call quality
5.8 years ago by miaowzai ▴ 390
0
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1
reply
3.1k
views
Comment: C: relationship between DP and variant call quality
5.8 years ago by miaowzai ▴ 390
0
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1
reply
3.1k
views
Comment: C: relationship between DP and variant call quality
5.8 years ago by miaowzai ▴ 390
0
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1
reply
3.1k
views
Comment: C: relationship between DP and variant call quality
5.8 years ago by miaowzai ▴ 390
1
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0
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3.5k
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Answer: C: strand information for SNPs from VCF file (convert into IMPUTE format)
6.0 years ago by miaowzai ▴ 390
0
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0
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2.3k
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Comment: C: Illumina exome beadchip duplicated positions
6.0 years ago by miaowzai ▴ 390
3
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2
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2.3k
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Illumina exome beadchip duplicated positions
SNP exome illumina beadchip
6.0 years ago by miaowzai ▴ 390
0
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0
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12k
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Comment: C: Error running smartpca from eigensoft
6.0 years ago by miaowzai ▴ 390
1
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0
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12k
views
Answer: A: Error running smartpca from eigensoft
6.0 years ago by miaowzai ▴ 390
0
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1
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12k
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Comment: C: Error running smartpca from eigensoft
6.0 years ago by miaowzai ▴ 390
0
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0
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12k
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Comment: C: Error running smartpca from eigensoft
6.0 years ago by miaowzai ▴ 390
21
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0
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180k
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Answer: A: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
6.2 years ago by miaowzai ▴ 390
0
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0
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1.4k
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strand info of array chips
microarray strand ChIP-Seq
6.7 years ago by miaowzai ▴ 390
0
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1
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5.0k
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Comment: C: what is 0 in the plink .bim file under allele1/2 column?
6.7 years ago by miaowzai ▴ 390
4
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3
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5.0k
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what is 0 in the plink .bim file under allele1/2 column?
plink allele microarray array chip
updated 6.7 years ago by 10k • written 6.7 years ago by ▴ 390
0
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0
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2.9k
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Comment: C: subseting VCF by bcftools
6.7 years ago by miaowzai ▴ 390
0
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0
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3.1k
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Comment: C: how to find strand information for a list of SNPs?
6.7 years ago by miaowzai ▴ 390
4
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5
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3.1k
views
how to find strand information for a list of SNPs?
strand microarray SNP imputation
updated 6.7 years ago by 23k • written 6.7 years ago by ▴ 390
1
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2
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2.9k
views
subseting VCF by bcftools
bcftools VCF
updated 6.7 years ago by ★ 1.0k • written 6.7 years ago by ▴ 390
1
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0
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2.7k
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Answer: A: Filter vcf file
6.7 years ago by miaowzai ▴ 390
1
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0
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3.1k
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Comment: C: how to find strand information for a list of SNPs?
6.7 years ago by miaowzai ▴ 390
2
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2
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3.5k
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strand information for SNPs from VCF file (convert into IMPUTE format)
VCF impute plink format strand
6.7 years ago by miaowzai ▴ 390
0
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0
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8.9k
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Comment: C: Reading a .ped file in R?
6.9 years ago by miaowzai ▴ 390
1
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1
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9.3k
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Comment: C: how to switch REF and ALT alleles in VCF files if the REF is incorrect according
7.0 years ago by miaowzai ▴ 390
0
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1
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2.2k
views
how to correct chromosome number and variant position in a VCF file by the rs#?
rsID VCF
updated 13 months ago by 43k • written 7.0 years ago by ▴ 390
1
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2
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2.7k
views
Is "Ectopic Expression" too much or too little expression of a gene?
gene-expression mouse devevlopment hox-genes
7.4 years ago by miaowzai ▴ 390
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