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0
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389
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Which are the best Cell - Cell communication packages for single cell RNASeq timeseries data?
R scrna seurat
20 months ago by AB ▴ 360
7
votes
3
replies
2.8k
views
Extending and clipping bed files
ChIP-Seq bedtools
updated 2.2 years ago by • 0 • written 7.6 years ago by ▴ 360
0
votes
4
replies
3.0k
views
Database of mouse ligand receptors
ligand-receptor database mm9
updated 2.7 years ago by • 0 • written 6.6 years ago by ▴ 360
2
votes
1
reply
2.9k
views
results from SNPSift Concordance
SNPSift concordance snp
updated 2.8 years ago by • 0 • written 7.1 years ago by ▴ 360
1
vote
3
replies
2.6k
views
Error :[[<- defined for objects of type "S4" only for subclasses of environment - Shiny App error
shiny Seurat single cell RNASeq
3.3 years ago by AB ▴ 360
3
votes
2
replies
5.2k
views
Error when using Bedtools fisher on sorted bed files
ChIP-Seq bedtools fisher test
updated 3.4 years ago by ▴ 150 • written 8.3 years ago by ▴ 360
3
votes
2
replies
1.2k
views
Aligning multiple runs using STARSolo
single cell RNASeq scRNA STARSolo STAR Alignment
updated 3.5 years ago by 82k • written 3.5 years ago by ▴ 360
0
votes
3
replies
1.8k
views
sratoolkit prefetch command returns no result
sratoolkit
updated 3.5 years ago by 82k • written 3.5 years ago by ▴ 360
2
votes
1
reply
3.9k
views
Downloading single cell RNASeq data using SRA
single-cell-RNASeq sratoolkit
updated 10 months ago by 43k • written 3.7 years ago by ▴ 360
0
votes
1
reply
988
views
Identifying appearance or disappearance of cell populations between WT and Mut single cell RNA-Seq data
single cell RNA-Seq Seurat
updated 3.9 years ago by 13k • written 3.9 years ago by ▴ 360
3
votes
3
replies
8.3k
views
Saving 3D plot from rgl as a pdf
rgl 3dplot
5.1 years ago by AB ▴ 360
3
votes
8
replies
11k
views
converting vcf to text file
vcf eqtl Matrix EQTL
updated 5.3 years ago by 20 • written 6.6 years ago by ▴ 360
0
votes
1
reply
1.4k
views
Count empty rows in Rhandsontable
rhandsontable shiny
5.6 years ago by AB ▴ 360
3
votes
6
replies
4.4k
views
Error while running pfamscan.pl : Unable to translate nucleotide sequences to protein sequences
RNA-Seq PfamScan lincRNA
updated 5.7 years ago by 43k • written 8.2 years ago by ▴ 360
0
votes
1
reply
1.3k
views
Error displaying GTEX like boxplot in UCSC Genome Browser - "Error creating boxplot from sample data"
ucsc genomebrowser boxplot GTEx Barcharts
5.7 years ago by AB ▴ 360
8
votes
1
reply
4.6k
views
Converting narrowpeak files to make it compatible with UCSC trackhub
ucsc genomebrowser narrowpeakfile ucscutilites
5.7 years ago by AB ▴ 360
1
vote
2
replies
4.3k
views
Classify cells using seurat
scRNA seurat monocle
updated 5.9 years ago by ▴ 110 • written 6.2 years ago by ▴ 360
6
votes
3
replies
5.6k
views
Log transformation of RPKM data for PCA analysis
RNA-Seq rpkm PCA log-transformation
updated 21 months ago by 43k • written 8.6 years ago by ▴ 360
2
votes
2
replies
4.8k
views
Vcf-compare two multi-sample vcf files
vcf-compare vcftools
updated 6.4 years ago by ▴ 10 • written 7.1 years ago by ▴ 360
6
votes
6
replies
2.8k
views
UCSC Fasta files by chromosome for rn6
ucsc fasta rn6
updated 6.6 years ago by ▴ 580 • written 6.6 years ago by ▴ 360
3
votes
3
replies
3.0k
views
running multiple RSeQC jobs
RNA-Seq RSeQC tin.py
updated 6.8 years ago by 20 • written 6.9 years ago by ▴ 360
2
votes
3
replies
5.8k
views
How to increase point size or color palette of a PCA plot using the scater package for scRNA analysis
scater plotPCA
6.8 years ago by AB ▴ 360
0
votes
0
replies
1.1k
views
Going from Snps to exons to protein domains
snps proteindomains variant Effect Predictor
7.1 years ago by AB ▴ 360
0
votes
2
replies
36k
views
"Error in contrib.url(repos, type) : trying to use CRAN without setting a mirror" Error when installing package
R shiny-server
7.1 years ago by AB ▴ 360
2
votes
5
replies
5.0k
views
Picard MergeSam error : Cannot use index file with textual SAM file
picard mergesam
7.1 years ago by AB ▴ 360
4
votes
3
replies
1.9k
views
bam-readcount : Reference_base is not the base with highest count
bam-readcount
updated 7.2 years ago by 6.2k • written 7.2 years ago by ▴ 360
0
votes
0
replies
1.8k
views
Very high negative scores from bigWigAverageOverBed
ChIP-Seq bigWigAverageOverBed
updated 7.5 years ago by 20 • written 7.6 years ago by ▴ 360
4
votes
2
replies
3.0k
views
Finding distribution of indels from vcf file
vcf samtools barplots
updated 7.6 years ago by ★ 3.8k • written 7.6 years ago by ▴ 360
0
votes
0
replies
1.8k
views
What is a good cutoff of mappability score from bigWigAverageOverBed ?
ChIP-Seq bigWigAverageOverBed
7.6 years ago by AB ▴ 360
2
votes
3
replies
3.1k
views
what do negative values from bigWigAverageOverBed output mean?
ChIP-Seq bigWigAverageOverBed deepTools
updated 7.7 years ago by 104k • written 7.7 years ago by ▴ 360
1
vote
1
reply
2.4k
views
Calculating FPKM of reads that overlap regions of interest
ChIP-Seq fpkm bedtools
7.8 years ago by AB ▴ 360
9
votes
2
replies
4.8k
views
MACS2 Peak Calling : Different number of peaks for each replicate
ChIP-Seq biological-replicates MACS2
updated 22 months ago by 43k • written 8.3 years ago by ▴ 360
0
votes
1
reply
1.7k
views
Finding out if non-coding transcripts from CPAT are tissue specific?
RNA-Seq CPAT lncRNA
updated 22 months ago by 43k • written 8.2 years ago by ▴ 360
3
votes
6
replies
3.3k
views
Differential binding analysis of motif-containing peaks
ChIP-Seq FIMO DiffBind
updated 22 months ago by 43k • written 8.3 years ago by ▴ 360
1
vote
3
replies
1.8k
views
Determine Condition using LogFC values
RNA-Seq fold-changes
updated 21 months ago by 43k • written 8.4 years ago by ▴ 360
0
votes
1
reply
3.2k
views
Removing batch effects from RPKM data
limma removeBatchEffect batch-effect rpkm
updated 4 weeks ago by 43k • written 8.6 years ago by ▴ 360
13
votes
6
replies
9.8k
views
PCA plot of RPKM data from RNA-Seq dataset
RNA-Seq bioconductor pca rpkm
updated 8.6 years ago by ▴ 760 • written 8.6 years ago by ▴ 360
37 results • Page 1 of 1
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