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Problem with GATK FilterMutectCalls : using contamination table doesn' t change anything
vcf contaminationtable gatk filtermutectcalls genomics
6 weeks ago by Samuel ▴ 20
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393
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Comment: Comment: I can't add VAF from population for all of my variants from VCF file
6 weeks ago by Samuel ▴ 20
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191
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Issues while trying to create my own PON (Panel Of Normals) with GATK
vcf gatk somatic genomics variants
6 weeks ago by Samuel ▴ 20
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2
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393
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I can't add VAF from population for all of my variants from VCF file
vaf vcf genomics gnomad allelicfrequency
6 weeks ago by Samuel ▴ 20
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396
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Comment: Comment: Can't use VarScan2 to call somatic variants from my tumor/sample vcf pair
9 weeks ago by Samuel ▴ 20
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3
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396
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Can't use VarScan2 to call somatic variants from my tumor/sample vcf pair
mutations vcf somatic varscan2 samtools
updated 9 weeks ago by 161k • written 9 weeks ago by ▴ 20
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784
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Comment: Comment: Can't properly use GATK Mutect2 to call somatic variants from my tumor/normal sa
9 weeks ago by Samuel ▴ 20
0
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1
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784
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Comment: Comment: Can't properly use GATK Mutect2 to call somatic variants from my tumor/normal sa
9 weeks ago by Samuel ▴ 20
0
votes
1
reply
784
views
Comment: Comment: Can't properly use GATK Mutect2 to call somatic variants from my tumor/normal sa
updated 9 weeks ago by 142k • written 9 weeks ago by ▴ 20
0
votes
1
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784
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Comment: Comment: Can't properly use GATK Mutect2 to call somatic variants from my tumor/normal sa
9 weeks ago by Samuel ▴ 20
0
votes
1
reply
784
views
Comment: Comment: Can't properly use GATK Mutect2 to call somatic variants from my tumor/normal sa
9 weeks ago by Samuel ▴ 20
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10
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784
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Can't properly use GATK Mutect2 to call somatic variants from my tumor/normal samples pair (BAM to VCF)
vaf gatk vcf genomics mutect2
updated 9 weeks ago by 142k • written 9 weeks ago by ▴ 20
3
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3
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466
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I can't add VAF from population for all of my variants from VCF file
genomics vcf gnomad
updated 9 weeks ago by 43k • written 9 weeks ago by ▴ 20
1
vote
1
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466
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Comment: Comment: I can't add VAF from population for all of my variants from VCF file
updated 9 weeks ago by 43k • written 9 weeks ago by ▴ 20
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