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344
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Comment: Comment: Duplicated reads (IDs) from nanopore sequencing
1 day ago by njornet ▴ 20
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2
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344
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Comment: Comment: Duplicated reads (IDs) from nanopore sequencing
2 days ago by njornet ▴ 20
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9
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344
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Duplicated reads (IDs) from nanopore sequencing
bam nanopore sequencing
1 day ago by njornet ▴ 20
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0
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188
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Comment: Comment: Phasing a mixture of two individuals' DNA with long reads
9 days ago by njornet ▴ 20
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2
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188
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Phasing a mixture of two individuals' DNA with long reads
long-reads phasing
9 days ago by njornet ▴ 20
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1
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253
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Comment: Comment: Software to separate reads from different individuals
18 days ago by njornet ▴ 20
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3
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253
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Software to separate reads from different individuals
software development nanopore
updated 17 days ago by 142k • written 18 days ago by ▴ 20
0
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0
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427
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Comment: Comment: Should I remove unlocalized scaffols in reference genome before alignment?
23 days ago by njornet ▴ 20
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0
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427
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Comment: Comment: Should I remove unlocalized scaffols in reference genome before alignment?
24 days ago by njornet ▴ 20
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5
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427
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Should I remove unlocalized scaffols in reference genome before alignment?
qualimap alignment minimap2 GRCh38 assembly
23 days ago by njornet ▴ 20
4
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2
replies
375
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Assume "yes" as the answer to any prompts with bioconda
docker container bioconda
updated 29 days ago by 8.6k • written 29 days ago by ▴ 20
0
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2
replies
308
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Bedmethyl file format
bedmethyl methylation
updated 4 weeks ago by 142k • written 4 weeks ago by ▴ 20
2
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2
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269
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Problem with Sniffles pipeline and SV calling help
SV sniffles StructuralVariant
updated 4 weeks ago by 142k • written 4 weeks ago by ▴ 20
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1
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1.1k
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Comment: Comment: Not getting any modification calls in nanopore reads with dorado basecaller
5 weeks ago by njornet ▴ 20
0
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1
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1.1k
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Comment: Comment: Not getting any modification calls in nanopore reads with dorado basecaller
5 weeks ago by njornet ▴ 20
0
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0
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211
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Comment: Comment: fmols for nanopore library loading
5 weeks ago by njornet ▴ 20
0
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0
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318
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Comment: Comment: Adaptive sampling for whole chromosomes
5 weeks ago by njornet ▴ 20
0
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1
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1.1k
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Comment: Comment: Not getting any modification calls in nanopore reads with dorado basecaller
5 weeks ago by njornet ▴ 20
0
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2
replies
211
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fmols for nanopore library loading
nanopore sequencing libraryprep fmol LSK114
updated 5 weeks ago by 142k • written 5 weeks ago by ▴ 20
0
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1
reply
318
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Comment: Comment: Adaptive sampling for whole chromosomes
5 weeks ago by njornet ▴ 20
0
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4
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318
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Adaptive sampling for whole chromosomes
T2T Nanopore AdaptiveSampling aneuploidy centromeres
5 weeks ago by njornet ▴ 20
1
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1
reply
1.1k
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Comment: Comment: Not getting any modification calls in nanopore reads with dorado basecaller
5 weeks ago by njornet ▴ 20
0
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0
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1.1k
views
Comment: Comment: Not getting any modification calls in nanopore reads with dorado basecaller
5 weeks ago by njornet ▴ 20
5
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14
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1.1k
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Not getting any modification calls in nanopore reads with dorado basecaller
mofications dorado basecalling nanopore methylation
updated 5 weeks ago by 142k • written 8 weeks ago by ▴ 20
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1
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1.1k
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Comment: Comment: Not getting any modification calls in nanopore reads with dorado basecaller
8 weeks ago by njornet ▴ 20
0
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0
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278
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Comment: Comment: Weird Basecalled reads PHRED quality plot from pycoQC
9 weeks ago by njornet ▴ 20
0
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2
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278
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Weird Basecalled reads PHRED quality plot from pycoQC
pycoQC nanopore sequencing
9 weeks ago by njornet ▴ 20
0
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0
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144
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SAMstat mapping quality report MAPQ gt vs MAPQ lt
Sequencing mapping samstat
9 weeks ago by njornet ▴ 20
0
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0
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637
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Comment: Comment: Target deletions with adaptive sampling
9 weeks ago by njornet ▴ 20
1
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2
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637
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Comment: Comment: Target deletions with adaptive sampling
9 weeks ago by njornet ▴ 20
3
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6
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637
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Target deletions with adaptive sampling
microdeletions nanopore AdaptiveSampling
9 weeks ago by njornet ▴ 20
0
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0
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277
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Comment: Comment: Considerations for nanopore adaptive sampling enrichment designing
10 weeks ago by njornet ▴ 20
1
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2
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277
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Considerations for nanopore adaptive sampling enrichment designing
adaptive-sampling nanopore
10 weeks ago by njornet ▴ 20
1
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2
replies
583
views
Align dorado output to reference
minimap2 bam nanopore dorado
updated 10 weeks ago by 6.4k • written 10 weeks ago by ▴ 20
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