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0
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0
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131
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Comparison between Bracken outputs
Bracken Kraken Taxonomy
5 weeks ago by SushiRoll ▴ 120
0
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1
reply
557
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Comment: Comment: Problems running Roary
updated 4 months ago by 43k • written 4 months ago by ▴ 120
0
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3
replies
557
views
Problems running Roary
pangenome Roary
updated 4 months ago by 43k • written 4 months ago by ▴ 120
0
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0
replies
399
views
Comment: Comment: Proper HTSeq usage on bacterial genome. Don't quite understand --t
7 months ago by SushiRoll ▴ 120
2
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2
replies
399
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Proper HTSeq usage on bacterial genome. Don't quite understand --t
RNAseq HTSeq
7 months ago by SushiRoll ▴ 120
0
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0
replies
918
views
Comment: Comment: Kraken2 is falsely assigning Klebsiella
7 months ago by SushiRoll ▴ 120
1
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1
reply
918
views
Comment: Comment: Kraken2 is falsely assigning Klebsiella
7 months ago by SushiRoll ▴ 120
4
votes
4
replies
918
views
Kraken2 is falsely assigning Klebsiella
taxonomy Kraken2
7 months ago by SushiRoll ▴ 120
0
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2
replies
1.3k
views
Comment: Comment: Highly inflated p-values in GWAS by regenie
7 months ago by SushiRoll ▴ 120
0
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0
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642
views
Comment: Comment: Kraken2 recovering only classified reads
8 months ago by SushiRoll ▴ 120
2
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2
replies
642
views
Kraken2 recovering only classified reads
Kraken2 taxonomy classification
8 months ago by SushiRoll ▴ 120
0
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0
replies
822
views
Comment: Comment: How to determine number of SNPs called?
8 months ago by SushiRoll ▴ 120
0
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1
reply
822
views
Comment: Comment: How to determine number of SNPs called?
8 months ago by SushiRoll ▴ 120
0
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3
replies
822
views
How to determine number of SNPs called?
Snippy SNP
8 months ago by SushiRoll ▴ 120
0
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3
replies
3.9k
views
10 follow
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
written 17 months ago by ▴ 120
0
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0
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728
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Comment: Comment: Bacterial metatransciptome antimicrobial resistance genes workflow?
12 months ago by SushiRoll ▴ 120
0
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1
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728
views
Comment: Comment: Bacterial metatransciptome antimicrobial resistance genes workflow?
12 months ago by SushiRoll ▴ 120
1
vote
4
replies
728
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Bacterial metatransciptome antimicrobial resistance genes workflow?
RNAseq metatranscriptomics
12 months ago by SushiRoll ▴ 120
0
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0
replies
585
views
Comment: Comment: Is there a SILVA database version with only prokaryotes?
12 months ago by SushiRoll ▴ 120
0
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2
replies
585
views
Is there a SILVA database version with only prokaryotes?
taxonomy SILVA 16S
12 months ago by SushiRoll ▴ 120
0
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0
replies
343
views
Inferring relative gene abundance from short reads
metagenomics read 16S short mapping
12 months ago by SushiRoll ▴ 120
0
votes
0
replies
944
views
Comment: Comment: How many refseqs are in refseq.genomes.k21.s1000.msh?
14 months ago by SushiRoll ▴ 120
0
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1
reply
944
views
Comment: Comment: How many refseqs are in refseq.genomes.k21.s1000.msh?
14 months ago by SushiRoll ▴ 120
2
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5
replies
944
views
How many refseqs are in refseq.genomes.k21.s1000.msh?
mash refseq
14 months ago by SushiRoll ▴ 120
0
votes
1
reply
1.3k
views
Comment: Comment: How not to merge R1 and R2 pair-end files in multiqc report
15 months ago by SushiRoll ▴ 120
1
vote
1
reply
893
views
Answer: Answer: Genome data visualization
15 months ago by SushiRoll ▴ 120
0
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0
replies
801
views
Comment: Comment: Retrieve specific fasta sequences from a group of assemblies
15 months ago by SushiRoll ▴ 120
0
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1
reply
801
views
Comment: Comment: Retrieve specific fasta sequences from a group of assemblies
15 months ago by SushiRoll ▴ 120
2
votes
4
replies
801
views
Retrieve specific fasta sequences from a group of assemblies
CDS gene sequence
15 months ago by SushiRoll ▴ 120
1
vote
0
replies
440
views
Enzyme substrate prediction - where to start?
enzyme substrate Protein docking
16 months ago by SushiRoll ▴ 120
0
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0
replies
374
views
NMDS from SNP distance matrix
NMDS SNP
16 months ago by SushiRoll ▴ 120
0
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0
replies
828
views
Comment: Comment: Need to compare two proteins
17 months ago by SushiRoll ▴ 120
6
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1
reply
828
views
Answer: Answer: Need to compare two proteins
17 months ago by SushiRoll ▴ 120
0
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0
replies
1.6k
views
Comment: Comment: How can I trim this data using Trimmomatic?
17 months ago by SushiRoll ▴ 120
0
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1
reply
1.6k
views
Answer: Answer: How can I trim this data using Trimmomatic?
17 months ago by SushiRoll ▴ 120
0
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0
replies
776
views
Comment: Comment: How many SNPs are too many?
17 months ago by SushiRoll ▴ 120
0
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1
reply
776
views
Comment: Comment: How many SNPs are too many?
17 months ago by SushiRoll ▴ 120
0
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4
replies
776
views
How many SNPs are too many?
snp
17 months ago by SushiRoll ▴ 120
0
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0
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3.9k
views
Comment: Comment: Discussion question: Cutoff for SNP phylogeny
17 months ago by SushiRoll ▴ 120
0
votes
0
replies
413
views
Using -fconst to run IQTree
IQtree phylogeny
17 months ago by SushiRoll ▴ 120
0
votes
0
replies
637
views
Snippy core output
SNP Snippy-core Snippy
18 months ago by SushiRoll ▴ 120
0
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0
replies
349
views
qPCR and HT-PCR inconsistency
HT-PCR qPCR
18 months ago by SushiRoll ▴ 120
0
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0
replies
1.0k
views
Comment: Comment: Doubt with snippy-multi reference
19 months ago by SushiRoll ▴ 120
2
votes
2
replies
1.0k
views
Doubt with snippy-multi reference
snippy-multi Snippy
19 months ago by SushiRoll ▴ 120
1
vote
0
replies
1.0k
views
Answer: Answer: How to download a genome assembly from the NCBI website?
19 months ago by SushiRoll ▴ 120
0
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0
replies
345
views
Problems installing PlasClass
PlasClass
19 months ago by SushiRoll ▴ 120
2
votes
1
reply
911
views
Comment: Comment: How to analyse multiple files in FastQC
19 months ago by SushiRoll ▴ 120
0
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0
replies
942
views
Comment: Comment: Resources for heavy snippy-core running
20 months ago by SushiRoll ▴ 120
0
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3
replies
942
views
Resources for heavy snippy-core running
Snippy snippy-core
20 months ago by SushiRoll ▴ 120
0
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1
reply
1.1k
views
Comment: Comment: samtools sort: couldn't allocate memory for bam_mem
20 months ago by SushiRoll ▴ 120
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