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Comment: Comment: TaxID mapping file
3 days ago by Lada ▴ 30
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0
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282
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Comment: Comment: TaxID mapping file
3 days ago by Lada ▴ 30
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3
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282
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TaxID mapping file
annotation blobtools RNAseq decontamination transcriptomes
3 days ago by Lada ▴ 30
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0
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387
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
12 days ago by Lada ▴ 30
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1
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387
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
14 days ago by Lada ▴ 30
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0
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387
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
14 days ago by Lada ▴ 30
2
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5
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387
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How to trim transcripts using information from NCBI contamination screen report
RNAseq assembly transcriptome contamination
12 days ago by Lada ▴ 30
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0
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24k
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Comment: Comment: BLAST options: max_target_seqs and num_alignments
6 weeks ago by Lada ▴ 30
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0
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360
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Pearson correlation for RNAseq data - input formats
vst Pearson-correlation TPM rlog RNA-seq
updated 6 months ago by 43k • written 6 months ago by ▴ 30
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302
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Salmon - mapping outputs
transcriptome RNAseq Salmon
6 months ago by Lada ▴ 30
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1.3k
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Comment: Comment: Providing multiple read files to Salmon
6 months ago by Lada ▴ 30
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1
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1.3k
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Comment: Comment: Providing multiple read files to Salmon
6 months ago by Lada ▴ 30
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1
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2.5k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
8 months ago by Lada ▴ 30
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2
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2.5k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
8 months ago by Lada ▴ 30
0
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0
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350
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OrthoPhy
orthophy orthofinder
updated 8 months ago by 43k • written 8 months ago by ▴ 30
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2
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2.5k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
updated 8 months ago by 142k • written 8 months ago by ▴ 30
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0
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584
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Comment: Comment: ML tree inferred from multiple genes
8 months ago by Lada ▴ 30
1
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2
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584
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ML tree inferred from multiple genes
phylogeny iqtree ML phylotranscriptomics orthologues
8 months ago by Lada ▴ 30
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0
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844
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Answer: Answer: How to download Time Calibration Data for Phylogenetic tree estimation ?
8 months ago by Lada ▴ 30
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0
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929
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Answer: Answer: Fossil calibration in PAML software?
8 months ago by Lada ▴ 30
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0
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868
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Comment: Comment: Multiple sequence aligments - parallelisation
8 months ago by Lada ▴ 30
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1
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868
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Comment: Comment: Multiple sequence aligments - parallelisation
8 months ago by Lada ▴ 30
0
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1
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868
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Comment: Comment: Multiple sequence aligments - parallelisation
8 months ago by Lada ▴ 30
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5
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868
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Multiple sequence aligments - parallelisation
MSA phylotranscriptomics muscle clustal
8 months ago by Lada ▴ 30
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0
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757
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Comment: Comment: Expected number of raw reads in fq.gz files in PE sequencing
8 months ago by Lada ▴ 30
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0
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757
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Comment: Comment: Expected number of raw reads in fq.gz files in PE sequencing
8 months ago by Lada ▴ 30
3
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5
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757
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Expected number of raw reads in fq.gz files in PE sequencing
RNA-seq fastq transcriptomics
updated 8 months ago by 43k • written 8 months ago by ▴ 30
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0
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792
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Comment: Comment: EggNOG mapper annotation results
8 months ago by Lada ▴ 30
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1
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1000
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Comment: Comment: Comparative transcriptomics
11 months ago by Lada ▴ 30
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0
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483
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Comment: Comment: Corset -D parameter
13 months ago by Lada ▴ 30
1
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2
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483
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Corset -D parameter
RNAseq transcriptomic Corset
13 months ago by Lada ▴ 30
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0
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907
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Comment: Comment: Salmon lib_format_counts.json - explanation
14 months ago by Lada ▴ 30
2
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2
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907
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Salmon lib_format_counts.json - explanation
RNAseq strand-specificity transcriptomic Salmon
14 months ago by Lada ▴ 30
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0
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434
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Comment: Comment: What is correct percentage of sense-stranded transcripts in directional de novo
14 months ago by Lada ▴ 30
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1
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434
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What is correct percentage of sense-stranded transcripts in directional de novo assemblies ?
Trinity strand-specificity RNA-seq Transdecoder
updated 14 months ago by 43k • written 14 months ago by ▴ 30
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1
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26k
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Comment: Comment: Gene Set Enrichment Analysis after DESeq2
15 months ago by Lada ▴ 30
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0
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2.2k
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Comment: Comment: GSEA on nonmodel organisms
15 months ago by Lada ▴ 30
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0
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2.2k
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Comment: Comment: GSEA on nonmodel organisms
15 months ago by Lada ▴ 30
2
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4
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2.2k
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GSEA on nonmodel organisms
GSEA RNAseq transcriptomics multispecies R
15 months ago by Lada ▴ 30
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0
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1.2k
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Comment: Comment: Differentially gene expression multispecies
15 months ago by Lada ▴ 30
1
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0
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529
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Comment: Comment: How to normalise counts to compare RNAseq results between two spcecies
15 months ago by Lada ▴ 30
0
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1
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1000
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Comment: Comment: Comparative transcriptomics
15 months ago by Lada ▴ 30
0
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0
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988
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Comment: Comment: comparative transcriptome - how to normalize and analyze DEGs?
15 months ago by Lada ▴ 30
0
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1
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1.6k
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Comment: Comment: Differential expression analysis
15 months ago by Lada ▴ 30
0
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0
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925
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Comment: Comment: When comparing gene expression in different species, should I assemble separate
updated 15 months ago by 43k • written 15 months ago by ▴ 30
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0
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676
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Answer: Answer: Differential Expression Analyses between closely related species
15 months ago by Lada ▴ 30
0
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0
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655
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Comment: Comment: Transcriptome assembly -mixing stranded and non-stranded data
2.1 years ago by Lada ▴ 30
0
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1
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655
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Comment: Comment: Transcriptome assembly -mixing stranded and non-stranded data
2.1 years ago by Lada ▴ 30
3
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4
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655
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Transcriptome assembly -mixing stranded and non-stranded data
Transcriptome assembly
2.1 years ago by Lada ▴ 30
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0
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2.7k
views
Answer: Answer: strand-specific transcriptome Oases vs. CLC
2.2 years ago by Lada ▴ 30
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