Salmon - mapping outputs
Hi guys,
I am using Salmon for read quantification on my Denovo transcriptomes. Does anyone know how can I get the information on the number (or percentage) of reads that mapped exactly 1 OR more than 1 time (something similar to Bowtie2 output) ? I looked at the lib_format_counts.json file and I am assuming that no of reads mapped >1 could be num_consistent_mappings but I am not sure if that's correct.
Tnx!
Lada
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