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questions
1
vote
2
replies
262
views
vg call is time consuming
vg
7 weeks ago by
Maxine
▴ 40
2
votes
7
replies
532
views
Does vg call allow fuzzy match during SV calling?
vg
updated 10 weeks ago by
Jordan M Eizenga
▴ 460 • written 10 weeks ago by
Maxine
▴ 40
2
votes
6
replies
1.2k
views
need interpretations for the vg call output
vcf
vg
6 months ago by
Maxine
▴ 40
2
votes
4
replies
785
views
How to annotate function of genes from non-model organism
gene
annotation
updated 7 months ago by
Axzd
▴ 70 • written 7 months ago by
Maxine
▴ 40
2
votes
3
replies
710
views
tximport error: vroom
tximport
7 months ago by
Maxine
▴ 40
2
votes
20
replies
2.4k
views
The number of SVs called by `vg call` is much smaller than the number of SVs in the VCF used to construct the graph
vg
8 months ago by
Maxine
▴ 40
4
votes
5
replies
1.2k
views
population-level stratagy of vg call
vg
10 months ago by
Maxine
▴ 40
2
votes
7
replies
1.2k
views
Why some insertions are symbolic in ALT column?
vcf
sniffles
updated 9 months ago by
Qi
• 0 • written 11 months ago by
Maxine
▴ 40
4
votes
9
replies
1.0k
views
vg map time consuming
vg
updated 10 months ago by
glenn.hickey
▴ 520 • written 10 months ago by
Maxine
▴ 40
3
votes
5
replies
974
views
unable to find most of SVs in constructed graph.vg
vg
updated 10 months ago by
glenn.hickey
▴ 520 • written 10 months ago by
Maxine
▴ 40
0
votes
0
replies
329
views
how to get the nucleotide squence behind a symbolic ALT in VCF
SV
vcf
sniffles
14 months ago by
Maxine
▴ 40
0
votes
1
reply
508
views
bayescan q values are generally higher than 0.05
statistics
bayescan
18 months ago by
Maxine
▴ 40
0
votes
8
replies
1.2k
views
how do you know an SV is located in exton, intron or Intergenic region
chromosome
variation
structural
region
updated 20 months ago by
reza.jabal
▴ 580 • written 20 months ago by
Maxine
▴ 40
4
votes
12
replies
2.4k
views
Error using vg construct: Index is older than VCF (though it's not)
vg
23 months ago by
Maxine
▴ 40
0
votes
2
replies
1.0k
views
how to split a Bam by chromosome and unplaced scaffolds.
samtools
bam
updated 11 months ago by
Ram
43k • written 2.0 years ago by
Maxine
▴ 40
2
votes
3
replies
988
views
sniffles process cannot end with warnings
SV
calling
sniffles
updated 2.0 years ago by
Matthias Zepper
4.6k • written 2.0 years ago by
Maxine
▴ 40
4
votes
4
replies
2.6k
views
no header in SAM file
minimap
samtools
pacbio
updated 2.1 years ago by
GenoMax
142k • written 2.1 years ago by
Maxine
▴ 40
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