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21
votes
11
replies
2.6k
views
6 follow
Forum:
Rust bioinformatics projects ideas
projects
scRNA-seq
RNA-seq
Rust
updated 6 months ago by
Jeremy Leipzig
22k • written 14 months ago by
bompipi95
▴ 150
1
vote
1
reply
415
views
Which type of variant caller should I use in a WES normal cell line sample?
variant-caller
WES
updated 11 months ago by
ATpoint
82k • written 11 months ago by
bompipi95
▴ 150
0
votes
0
replies
525
views
Picard's CollectGcBiasMetrics gc-bias plot- help with interpretation
picard
gc-bias
wes
12 months ago by
bompipi95
▴ 150
1
vote
3
replies
1.2k
views
Off-target % for whole-exome sequencing panel
WES
updated 12 months ago by
trausch
★ 1.9k • written 12 months ago by
bompipi95
▴ 150
0
votes
1
reply
565
views
WES variant calling with DNBSEQ-T7 - technical quality assessment
WES
DNA-seq
GATK
variant-calling
mutect2
updated 12 months ago by
colindaven
6.4k • written 12 months ago by
bompipi95
▴ 150
0
votes
1
reply
6.5k
views
Comment:
Comment: 10x 3' library creates R1 and R2 fastq files with the same read length
14 months ago by
bompipi95
▴ 150
0
votes
0
replies
597
views
Comment:
Comment: Integrating single-nucleus RNA-seq and single-cell RNA-seq datasets
14 months ago by
bompipi95
▴ 150
0
votes
2
replies
597
views
Integrating single-nucleus RNA-seq and single-cell RNA-seq datasets
snRNAseq
single-cell
scRNAseq
14 months ago by
bompipi95
▴ 150
0
votes
0
replies
946
views
Comment:
Comment: Check my understanding - difference between number of reads sequenced and Seurat
14 months ago by
bompipi95
▴ 150
1
vote
2
replies
946
views
Check my understanding - difference between number of reads sequenced and Seurat nCount_RNA
scRNAseq
14 months ago by
bompipi95
▴ 150
0
votes
0
replies
777
views
Comment:
Comment: issue with merging single cell data files
14 months ago by
bompipi95
▴ 150
0
votes
0
replies
2.6k
views
Comment:
Comment: Rust bioinformatics projects ideas
14 months ago by
bompipi95
▴ 150
0
votes
0
replies
2.6k
views
Comment:
Comment: Rust bioinformatics projects ideas
14 months ago by
bompipi95
▴ 150
0
votes
0
replies
2.6k
views
Comment:
Comment: Rust bioinformatics projects ideas
14 months ago by
bompipi95
▴ 150
0
votes
0
replies
2.6k
views
Comment:
Comment: Rust bioinformatics projects ideas
14 months ago by
bompipi95
▴ 150
0
votes
0
replies
1.5k
views
Comment:
Comment: 1 is not found in chromosome sizes file
14 months ago by
bompipi95
▴ 150
2
votes
0
replies
840
views
Answer:
Answer: To batch correct or analyse separately?
15 months ago by
bompipi95
▴ 150
6
votes
3
replies
840
views
To batch correct or analyse separately?
scRNA-seq
batch
correction
15 months ago by
bompipi95
▴ 150
4
votes
4
replies
890
views
Aligning reads from mouse samples that express 1 human gene
realignment
updated 18 months ago by
swbarnes2
14k • written 18 months ago by
bompipi95
▴ 150
0
votes
0
replies
890
views
Comment:
Comment: Aligning reads from mouse samples that express 1 human gene
18 months ago by
bompipi95
▴ 150
2
votes
1
reply
755
views
t2t human reference genome for RNA-seq
t2t
hs1
RNA-seq
updated 14 months ago by
O.rka
▴ 720 • written 18 months ago by
bompipi95
▴ 150
1
vote
2
replies
5.7k
views
Comment:
Comment: How can I learn how to create a bioinformatics pipeline?
18 months ago by
bompipi95
▴ 150
0
votes
0
replies
514
views
Answer:
Answer: Close correlation between differentially-expressed genes
19 months ago by
bompipi95
▴ 150
6
votes
2
replies
917
views
Identifying tumor vs normal cells in scRNAseq samples
seurat
CNV
scRNA-seq
cancer
updated 20 months ago by
benformatics
3.9k • written 20 months ago by
bompipi95
▴ 150
2
votes
2
replies
1.1k
views
Help with kallisto-bustools: how to interpret the inspect.json output file
scRNAseq
bustools
kallisto
updated 11 months ago by
Ram
43k • written 2.0 years ago by
bompipi95
▴ 150
1
vote
1
reply
1.1k
views
Answer:
Answer: Help with kallisto-bustools: how to interpret the inspect.json output file
2.0 years ago by
bompipi95
▴ 150
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