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21 results • Page
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1.2k
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News:
The GDC Legacy Archive is retiring soon.
genomic-data-commons
tcga
gdc
23 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
2
replies
461
views
News:
FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq
variant-calling
RNA-seq
illumina
transcriptomics
15 days ago by
David Langenberger
11k
1
vote
2
replies
322
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 21 days ago by
Weiwen
• 0 • written 22 days ago by
MICOS
▴ 10
1
vote
2
replies
248
views
News:
ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
BestTalk
PlatformPresentation
offtopic
updated 7 days ago by
colindaven
6.4k • written 9 days ago by
Dr.
• 0
1
vote
0
replies
211
views
News:
Landscape Genomics course in Switzerland
LFMM
Landscape-Genomics
Sambada
R
Local-Adaptation
26 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
198
views
News:
Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy
Python
NumPy
updated 28 days ago by
Ram
44k • written 28 days ago by
Chakri
• 0
1
vote
0
replies
184
views
News:
Course on Manual Genome Curation
Genome-Assembly
Pretext-View
Manual-Genome-Curation
updated 12 days ago by
Ram
44k • written 12 days ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
174
views
News:
course on Landscape Genomics at the EPFL in Lausanne (June 17-21)
LandscapeGenomics
SNPs
LocalAdaptation
GIS
19 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
161
views
News:
Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis
Statistics
R
updated 28 days ago by
Ram
44k • written 28 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
155
views
News:
Cellosaurus release 49 is available
cell
biocuration
line
database
news
knowledgebase
25 days ago by
Amos Bairoch
▴ 120
0
votes
0
replies
149
views
News:
Online course: Genome Annotation
Genome-Assembly
Genome-Annotation
29 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
142
views
News:
Online course: Introduction to Deep Learning
Python
Deep-Learning
Convolutional-Neural-Network
Machine-Learning
updated 20 days ago by
Ram
44k • written 20 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
138
views
News:
Online course: An Introduction to Nanopore Direct RNA Sequencing
Nanopore
RNAseq
16 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
137
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
21 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
135
views
News:
Online course: Bioinformatic analysis of transposable elements
GenomeAssembly
Transcriptomics
TransposableElements
ManualCuration
23 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
133
views
News:
Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding
Programming
R
updated 26 days ago by
Ram
44k • written 26 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
126
views
News:
Online course: Population Genomic Inference from Low-Coverage Whole-Genome Sequencing Data
Genotype-Likelihoods
Low-Coverage
Population-Genomics
ANGSD
updated 1 day ago by
Ram
44k • written 2 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
105
views
News:
Online course: Network analysis in Systems Biology with R/Bioconductor
Bioconductor
Systems-Biology
Network-Analysis
R
updated 8 days ago by
Ram
44k • written 8 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
104
views
News:
Bioinformatic Analysis of Transposable Elements course
Genome-Annotation
TE
Manual-Curation
Transposable-Elements
updated 6 days ago by
Ram
44k • written 6 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
99
views
News:
Online course- Advanced Python for Life Sciences
Python-Programming
Data-Visualisation
Machine-Learning
updated 7 days ago by
Ram
44k • written 7 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
97
views
News:
New course: Manipulation of NGS Data for Genomic and Population Genetics Analyses
KeepLearning
TScourses
13 days ago by
Transmitting Science communication
▴ 70
21 results • Page
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Recent Votes
Answer: when I use htslib to write a bam. Error of "truncated file" shows by samtools
Survival analysis of TCGA patients integrating gene expression (RNASeq) data
Comment: I cannot download VG in any way
Why does WGCNA use weighted correlation instead of Pearson correlation?
Explanation of vg deconstruct vcf output
I cannot download VG in any way
Comment: I cannot download VG in any way
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Recent Replies
Comment: Invalid CIGAR after using bam clipOverlap
by
MboiTui
▴ 20
update. The error persists. With ValidateSamFile I get no error until i use MarkDuplicates. Then for the MarkDuplicates output I get: …
Comment: when I use htslib to write a bam. Error of "truncated file" shows by samtools
by
Aaron
▴ 10
Thanks very much.
Answer: help in changing Y scale in R
by
LauferVA
4.2k
Hello @ab33b6d7 , Below is approximately the code block you provided, with a few additional lines added. Each of the new lines has > …
Comment: 2 PhD Students in single-cell bioinformatics
by
Uzma
• 0
I want to apply for this PhD position. I did MSc Zoology and MPhil biosciences.
Comment: Rseqc infer_experiment.py: 0 usable reads sampled and unknown data type
by
mazegriff
• 0
Hi pubsurfted, I ran into the same issue using a reference transcriptome with HISAT2 from the Ensembl database. For others with similar e…
Comment: Intersection of multiple vcf files
by
Jeremy Leipzig
22k
isec is pretty awful for these set operations - especially since individual samples present alleles, not lines in a VCF file. If you can co…
Comment: help in changing Y scale in R
by
Medhat
9.7k
Maybe try to calculate min and max combined_min <- min(a_filtered$value, a_filtered_tv$value, na.rm = TRUE) combined_max <- max(a_…
Answer: help in changing Y scale in R
by
ATpoint
82k
Use `+ylim(c(lower, upper))`. Either set manually, or query both `a_filtered` and `a_filtered_tv` for the minimum and maximum values that g…
Comment: Error with pheatmap - 'from' must be a finite number
by
zx8754
11k
I am not familiar with deseq data, but if it makes sense, remove rows/columns that have only NAs. #remove rows x<- mat.z[ rowSums(…
Answer: when I use htslib to write a bam. Error of "truncated file" shows by samtools
by
John Marshall
3.1k
There are several problems with this code: 1. You have not set `b->l_data`, which here should be set to the same value as `b->m_data`. T…
Comment: Best practices in Fungal Genome Assembly
by
Umer
▴ 50
Should I use both Recon and Pilon for polshing ? Recon uses Long-reads and Pilon uses short-read. if both should be used, is their any pref…
Comment: Mutation counts corrected by number of samples
by
garcesj
▴ 50
How come? If I have a pro-tumorigenic product, for example, wouldn't this comparison be valid?
Comment: How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Pac
by
Ngrin
• 0
Thanks @Zhenyu Zhang for your response. I have just looked at the files you mentioned. Do you have any recommended package or code snippet …
Comment: coding and non-coding region of the viral genome
by
Ghada
• 0
As far I understand non coding region equal to the intergenic region? please can you write an example for how to calculate one region ? I…
Comment: How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Pac
by
Zhenyu Zhang
★ 1.2k
In the GDC, there are raw float value CNV data, and integer CNV values after advanced modeling. If you only want those floating-point numbe…
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