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619 results • Page 2 of 13
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206
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News: NCBI's ClinVar now accepting somatic variation data
variation NCBI somatic-variants ClinVar
10 weeks ago by PeterC_NCBI ▴ 410
1
vote
1
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302
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News: EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 10 weeks ago by • 0 • written 3 months ago by ▴ 10
1
vote
0
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232
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News: Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow pipeline workshop
10 weeks ago by David Langenberger 11k
0
votes
0
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185
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News: Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly Galaxy Genome-Annotation
updated 10 weeks ago by 44k • written 10 weeks ago by ★ 2.5k
0
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0
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193
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News: Call for abstract: Quest for Orthologs meeting in Montreal
conference phylogeny comparativegenomics orthology evolution
10 weeks ago by sina.majidian ▴ 20
1
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0
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187
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News: shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability terminal bash
11 weeks ago by David Langenberger 11k
1
vote
1
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240
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News: Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser IGB
updated 11 weeks ago by 44k • written 11 weeks ago by • 0
0
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0
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220
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News: Online course: Network Analysis in Systems Biology with R/Bioconductor
R RNA-seq Network-Analysis Bioconductor Systems-Biology
updated 11 weeks ago by 44k • written 11 weeks ago by ★ 2.5k
0
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0
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253
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News: The 2024 Canadian Bioinformatics Workshops are here!
CBW workshop training
11 weeks ago by bioinformatics.ca • 0
0
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0
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197
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News: Live online course Data Manipulation with R Tidyverse, 3 and 5 of April
R manipulation tidyverse data
12 weeks ago by Sole • 0
0
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0
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220
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News: Online course: Reproducibility in Bioinformatics
Docker Singularity WorkflowManagementSystems Reproducibility
12 weeks ago by carlopecoraro2 ★ 2.5k
0
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0
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282
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News: Online course: Genome Assembly Using Oxford Nanopore Sequencing - 4 seats remaining
GenomeAssembly Nanopore longreads
12 weeks ago by carlopecoraro2 ★ 2.5k
0
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0
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260
views
News: Webinar about scRNA-seq cell type prediction
scRNAseq
updated 3 months ago by 142k • written 3 months ago by • 0
0
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0
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287
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News: Online course: Spatial Omics in R/Bioconductor
R Spatial-Omics Bioconductor tidyverse transcriptomics
updated 3 months ago by 44k • written 3 months ago by ★ 2.5k
0
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0
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234
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News: Online course: Model-Based Demographic Inference from Population Genomics
Demographic-Inference Population-Genomics Demographic-Models
updated 3 months ago by 44k • written 3 months ago by ★ 2.5k
0
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0
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212
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News: Online course: R/Bioconductor for Mass Spectrometry and Proteomics
R Proteomics Bioconductor Mass-Spectrometry
updated 3 months ago by 44k • written 3 months ago by ★ 2.5k
0
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0
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215
views
News: Virtual Workshops with the UConn Computational Biology Core
Workshop genomics
updated 3 months ago by 142k • written 3 months ago by ▴ 10
0
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0
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204
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News: NGS Data Analysis Courses for Absolute Beginners
NGS DNAseq RNAseq singlecellsequencing DataAnalysis
3 months ago by David Langenberger 11k
0
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0
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218
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News: Online course: Genome Assembly and Annotation
Annotation Genome-Assembly Nanopore Pacbio
updated 3 months ago by 44k • written 3 months ago by ★ 2.5k
0
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0
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200
views
News: Online course: Computation Tumor Evolution
R Cancer-Genomics Tumor-Evolution Genomics
updated 3 months ago by 44k • written 3 months ago by ★ 2.5k
0
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0
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196
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News: Course live online Intro Bayesian Analyses, March 4-8, 2024
R python bayesian
3 months ago by Sole • 0
0
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1
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1.0k
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News: FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS RNA-Seq Workshop
3 months ago by David Langenberger 11k
0
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0
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248
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News: Online course : Meta-Analysis in R
R Meta-Analysis Statistics
updated 3 months ago by 44k • written 3 months ago by ★ 2.5k
1
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0
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212
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News: Cellosaurus release 48 is available
cell-line biocuration cellosaurus knowledgebase
3 months ago by Amos Bairoch ▴ 120
0
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0
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249
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News: Online course: Genome Assembly Using Oxford Nanopore Sequencing
Genome-Assembly Nanopore
updated 3 months ago by 44k • written 3 months ago by ★ 2.5k
0
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0
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271
views
News: BLAST FASTA Files Will No Longer Be Available on the FTP Site Effective April 2024
NCBI BLAST
3 months ago by PeterC_NCBI ▴ 410
0
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0
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255
views
News: EMBL-EBI Training | Systems biology: from large datasets to biological insight
systems
3 months ago by EMBL Events ▴ 10
0
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0
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223
views
News: Online course - Sex Chromosome Evolution
Evolution Genomics Sex-Chromosome
updated 4 months ago by 44k • written 4 months ago by ★ 2.5k
0
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1
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845
views
News: LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis (February 28 - March 1, 2024)
NGS Online-Workshop
updated 4 months ago by 44k • written 4 months ago by 11k
7
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2
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1.2k
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News: NGS Data Analysis Workshops 2024
scRNA-seq dna-seq rna-seq nextflow
4 months ago by David Langenberger 11k
0
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0
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257
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News: Online course: Generalized Additive Models (GAMs) in R
R Statistics Gams
4 months ago by carlopecoraro2 ★ 2.5k
0
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0
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285
views
News: Online course - Introduction to Python for biologists
Python Programming NGSData
4 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
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225
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News: Online course - Introduction to Machine Learning in R for omics data
R Omics MachineLearning StatisticalLearning
4 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
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213
views
News: Online course - Flow cytometry data analysis with R/Bioconductor
R Flow-Cytometry Bioconductor
updated 4 months ago by 44k • written 4 months ago by ★ 2.5k
0
votes
1
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354
views
News: Reminder: NCBI ClinVar XML update to accommodate somatic variants coming Jan 29, 2024
SNP XML ClinVar NCBI
4 months ago by PeterC_NCBI ▴ 410
4
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0
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228
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News: Transform Your Research with Our NGS Data Analysis Online Course!
DNAseq NGS Biologists OnlineCourse RNAseq
4 months ago by David Langenberger 11k
0
votes
0
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269
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News: 3rd edition of the Winter School in Bioinformatics - Online February 26 - March 1
genomics reproducibility phylogenomics transcriptomics
4 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
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594
views
News: course - Reproducibility in Bioinformatics
Docker Reproducibility
written 14 months ago by ★ 2.5k
0
votes
1
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407
views
News: Online Course - Genomic Prediction
Genomic-Prediction Selective-Breeding
updated 4 months ago by 44k • written 4 months ago by ★ 2.5k
0
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0
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298
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News: Flow cytometry data analysis with R/Bioconductor course
FlowCytometry R Bioconductor
5 months ago by carlopecoraro2 ★ 2.5k
2
votes
2
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558
views
News: Unix and Shell Scripting for Bioinformatics course
Bash Unix Shell-Scripting
5 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
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341
views
News: Bayesian Data Analysis in R course
R Bayesian-Statistics
updated 5 months ago by 44k • written 5 months ago by ★ 2.5k
0
votes
0
replies
352
views
News: Practical Hands-On Introduction to R course
R Tidyverse Data-Analysis
updated 5 months ago by 44k • written 5 months ago by ★ 2.5k
0
votes
0
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315
views
News: Landscape Genomics course at the EPFL in Lausanne, Switzerland
genomics Landscape-Genomics
updated 5 months ago by 44k • written 5 months ago by ★ 2.5k
0
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0
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306
views
News: New version of ElasticBLAST (1.2.0) available from NCBI
ElasticBLAST NCBI BLAST
5 months ago by PeterC_NCBI ▴ 410
0
votes
0
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298
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News: Course. - Gene Set Enrichment Analysis in R/Bioconductor - ONLINE, 22-25 January
R Gene-Set-Enrichment-Analysis GSEA Bioconductor
updated 5 months ago by 44k • written 5 months ago by ★ 2.5k
0
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0
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319
views
News: University of Connecticut Single Cell RNA-seq Workshop December 12-15, 2023
expression singlecell rnaseq
5 months ago by mia.nahom ▴ 10
0
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0
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293
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News: Online course: Introduction to Python, February 12th-March 11th, 2024
python courses
5 months ago by Sole • 0
0
votes
1
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402
views
News: Course: Genome Assembly and Annotation
Biodiversity Genome-Assembly Genome-Annotation Long-reads
updated 5 months ago by 44k • written 5 months ago by ★ 2.5k
0
votes
0
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369
views
News: GWAS course
R GWAS
updated 5 months ago by 44k • written 6 months ago by ★ 2.5k
619 results • Page 2 of 13
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Permanent Position as Researcher/Computational Biologist at the National Genomics Infrastructure (Sweden)
Permanent Position as Researcher/Computational Biologist at the National Genomics Infrastructure (Sweden)
Downloading NCBI Blast nt database
Comment: log2 fold change in RNA-seq analysis
Comment: log2 fold change in RNA-seq analysis
Answer: Ideal PC configurations and operating system for bioinformatics laboratory
correct way of analyzing cell proportions in singlecell data
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Comment: What do the transcript variant # mean in RefSeq? by GenoMax 142k
> What do these correspond to? It does not seem to be the longest transcript. Is it the canonical transcript? Those are just different tra…
Answer: Mouse or Rat Gene Expression Data Similar to GTEx by jared.andrews07 ★ 17k
MGI has a [Gene Expression Database](https://www.informatics.jax.org/expression.shtml) that'll largely get you what you want.
Comment: Difference in Bismark output methylation call files and coverage files by Papyrus ★ 2.9k
Your files end in `CpG_report` so they are the "genome-wide cytosine report output". If you look at the [Bismark documentation][1] you will…
Answer: Error when looping over multiple columns in a data frame in R by Mohamed Samir ▴ 30
Dear Jeremy, Thanks. What I could not understand why you wrote it like : cutpoint_results[[col_name]] ? Is it because it is a list result…
Comment: BEAST2.5 Chloroplast Divergence Time using Fossil Records by Ram 44k
Do not use all caps - it's bad etiquette. I've fixed things for you this time.
Comment: minfi::getQC - badsamplecutoff 10.5 by Papyrus ★ 2.9k
I've recently also analyzed EPICv2 and have noticed that the log2 median intensities (and particularly the "uMed" channel), for an otherwis…
Comment: log2 fold change in RNA-seq analysis by May Ling • 0
Thank you so much for the confirmation Sir! Appreciate that. I think the paragraph was trying to say that: a fold change greater than **…
Comment: Difference in Bismark output methylation call files and coverage files by skdv2522 • 0
Chr1 192 + 0 0 CG CGA Chr1 193 - 0 0 CG CGA Chr1 197 + 0 0 CG CGT Chr1 198 - 0 0 CG CGG Chr1 218 + 0 0 CG CGA Chr1 …
Comment: Error with BiocParallel. No barcodes files found by Pierre Lindenbaum 162k
cross-posted: https://stackoverflow.com/questions/78522566/ > Do not post on multiple forums - that is just bad etiquette. What's worse, y…
Comment: log2 fold change in RNA-seq analysis by dsull ★ 6.1k
Your understanding is correct. That attached highlighted sentence is wrong.
Comment: minfi::getQC - is default badsamplecutoff of 10.5 always appropriate? ~half of s by June • 0
Hello, I just started working on analyzing methylation EPIC array data using minfi. Data is generated on EPICv2 array and I'm using up…
Comment: Classic threshold for log2 fold change in RNA-seq experiment by Ram 44k
Please do not add answers unless you're actually answering the top level question. Open your own question if the forum has not addressed it…
Comment: log2 fold change in RNA-seq analysis by May Ling • 0
Thank you for your prompt reply Sir! I think I finally understand the concept. Please correct me if I'm wrong: Let's say we are comparing …
Comment: log2 fold change in RNA-seq analysis by Hatchet ▴ 10
He means that the result of DEA will contain DEGs of A vs B. He gets LFC numbers in one column and positive LFC numbers will mean positive …
Comment: Z score by Akash D ▴ 50
I made this. Z scored on log2FC? will anyone support me on this? 3 groups A,B,C
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