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728 results • Page
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1
vote
1
reply
1.7k
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News:
2nd Berlin Summer School in NGS Data Analysis 2018
DNA-Seq
Workshop
NGS
RNA-Seq
updated 12 months ago by
Ram
43k • written 6.2 years ago by
David Langenberger
11k
1
vote
2
replies
1.7k
views
News:
NCBI Datasets - try it out!
Assembly
refseq
genome
ncbi
updated 11 months ago by
Ram
43k • written 4.1 years ago by
vkkodali_ncbi
★ 3.7k
2
votes
0
replies
1.7k
views
News:
Call for Abstracts: BOSC 2019: Bioinformatics Open Source Conference
BOSC
Conference
Open-Source
updated 11 months ago by
Ram
43k • written 5.2 years ago by
Chris Fields
★ 2.2k
2
votes
0
replies
1.7k
views
News:
Introduction to bioinformatics for DNA and RNA sequence analysis (IBDR01) - last few places
RNA-Seq
next-gen
workshop
updated 11 months ago by
Ram
43k • written 5.8 years ago by
oliverhooker
▴ 60
0
votes
0
replies
1.7k
views
News:
Integrative Genomic Viewer (IGV) works with Amazon S3
amazon
igv
updated 11 months ago by
Ram
43k • written 5.3 years ago by
Roman Valls Guimerà
▴ 620
2
votes
3
replies
1.7k
views
News:
GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
Galaxy-Community-Conference
BOSC
GCC
updated 12 months ago by
Ram
43k • written 6.2 years ago by
Chris Fields
★ 2.2k
0
votes
0
replies
1.7k
views
News:
Webinar: ChIP-Seq / ATAC-Seq Analysis and Integration with Gene Expression Data
webinar
RNA-Seq
ChIP-Seq
updated 11 months ago by
Ram
43k • written 5.7 years ago by
kgosche
▴ 30
2
votes
0
replies
1.7k
views
News:
Course - Metabolomics - Berlin, 25-29 November 2019
Metabolomics
R
Bioconductor
updated 11 months ago by
Ram
43k • written 4.9 years ago by
carlopecoraro2
★ 2.5k
5
votes
2
replies
1.7k
views
News:
#scRNABIO & organoids meeting
single-cell-sequencing
microfluidics
organoids
updated 11 months ago by
Ram
43k • written 5.8 years ago by
aln
▴ 320
38
votes
8
replies
1.7k
views
6 follow
News:
What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq
DNA
WGS
updated 11 months ago by
Alex Reynolds
35k • written 11 months ago by
David Langenberger
11k
0
votes
0
replies
1.7k
views
News:
Course: eDNA Metabarcoding in Canada
next-gen-sequencing
R
updated 11 months ago by
Ram
43k • written 5.7 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.6k
views
News:
Bias, robustness and scalability in single-cell differential expression analysis
RNA-Seq
updated 12 months ago by
Ram
43k • written 6.2 years ago by
Eric Lim
★ 2.1k
2
votes
2
replies
1.6k
views
News:
User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning
RNA-seq
updated 11 months ago by
Ram
43k • written 5.8 years ago by
sahil
▴ 10
0
votes
0
replies
1.6k
views
News:
Course. Analysis of single cell RNA-seq data.25 February-1 March 2019 in Berlin (Germany)
scRNAseq
RNA-Seq
updated 11 months ago by
Ram
43k • written 5.9 years ago by
carlopecoraro2
★ 2.5k
0
votes
5
replies
1.6k
views
News:
LAST CALL - 'Introduction to NGS Data Analysis' course in Berlin, October 8-10 2018
NGS
training
RNA-Seq
DNA-Seq
updated 12 months ago by
Ram
43k • written 5.9 years ago by
David Langenberger
11k
1
vote
0
replies
1.6k
views
News:
Machine Learning and Visualization of High-Throughput Biomedical Data
next-gen-sequencing
gene
updated 12 months ago by
Ram
43k • written 6.0 years ago by
sahil
▴ 10
0
votes
0
replies
1.6k
views
News:
Analysis of single cell RNA-seq data Workshop
R
RNA-Seq
next-gen
updated 11 months ago by
Ram
43k • written 5.6 years ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
1.6k
views
News:
:: FINALL CALL :: RNA-Seq Data Analysis Workshop for Beginners - Registraion to be closed
NGS
RNA-Seq
Training
updated 11 months ago by
Ram
43k • written 4.5 years ago by
David Langenberger
11k
0
votes
0
replies
1.6k
views
News:
16S/ ITS Metabarcoding course using QIIME2 platform
Metabarcoding
updated 11 months ago by
Ram
43k • written 5.3 years ago by
carlopecoraro2
★ 2.5k
5
votes
1
reply
1.6k
views
News:
2-day WORKSHOP on SNAKEMAKE
next-gen
updated 12 months ago by
Ram
43k • written 5.9 years ago by
carlopecoraro2
★ 2.5k
9
votes
4
replies
1.6k
views
News:
Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 12 months ago by
Ram
43k • written 6.2 years ago by
Laura
★ 1.8k
0
votes
0
replies
1.6k
views
News:
Genome Assembly and Annotation Workshop
annotation
assembly
genome
updated 11 months ago by
Ram
43k • written 5.6 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.6k
views
News:
Introduction to bioinformatics for DNA and RNA sequence analysis (IBDR01)
R
next-gen
RNA-Seq
genome
updated 12 months ago by
Ram
43k • written 6.0 years ago by
oliverhooker
▴ 60
13
votes
2
replies
1.5k
views
News:
Thank you Biostars!
meta
updated 11 months ago by
Ram
43k • written 5.0 years ago by
Glory Basumata
▴ 140
5
votes
2
replies
1.5k
views
News:
Google Dataset Search
google
updated 11 months ago by
Ram
43k • written 5.7 years ago by
Pierre Lindenbaum
161k
2
votes
0
replies
1.5k
views
News:
UCSC Genome Browser JSON API
ucsc
json
api
updated 11 months ago by
Ram
43k • written 4.9 years ago by
Pierre Lindenbaum
161k
0
votes
0
replies
1.5k
views
News:
BioVM 18.04 - call for testing and feedback
ubuntu
virtual-machine
linux
biovm
updated 12 months ago by
Ram
43k • written 6.1 years ago by
vimalkvn
▴ 320
4
votes
0
replies
1.5k
views
News:
All of Us (NIH) precision medicine research program is now open for enrollment
precision-medicine
updated 12 months ago by
Ram
43k • written 6.0 years ago by
GenoMax
142k
0
votes
1
reply
1.5k
views
News:
Live Webinar on RNA-Seq Data Analysis on 28 Feb 2018
splice-variants
RNA-Seq
alignment
Strand-NGS
updated 12 months ago by
Ram
43k • written 6.3 years ago by
Genomics
▴ 70
0
votes
0
replies
1.5k
views
News:
Introduction to Python for biologists
Programming
next-gen
updated 11 months ago by
Ram
43k • written 5.8 years ago by
carlopecoraro2
★ 2.5k
8
votes
6
replies
1.5k
views
News:
Illumina to Acquire Pacific Biosciences
pacbio
illumina
updated 11 months ago by
Ram
43k • written 5.5 years ago by
Istvan Albert
100k
5
votes
0
replies
1.5k
views
News:
Bioinformatics in Google Summer of Code 2018
Ensembl
GSOC
updated 12 months ago by
Ram
43k • written 6.3 years ago by
Emily
23k
0
votes
0
replies
1.5k
views
News:
Eukaryotic metabarcoding (EUKB01)
Metabarcoding
updated 12 months ago by
Ram
43k • written 6.0 years ago by
oliverhooker
▴ 60
0
votes
0
replies
1.5k
views
News:
Microbiome Data Analysis Using QIIME2 (MBQM01)
RNA-Seq
next-gen
updated 11 months ago by
Ram
43k • written 5.0 years ago by
oliverhooker
▴ 60
5
votes
3
replies
1.5k
views
News:
Top GitHub repos for biomedicine
open-source
software
GitHub
updated 11 months ago by
Ram
43k • written 5.4 years ago by
field.cady
▴ 50
0
votes
0
replies
1.5k
views
News:
RNA-Seq Data Analysis Workshop in Leipzig, Germany (23 - 26 October 2018)
hands-on
RNA-Seq
workshop
updated 12 months ago by
Ram
43k • written 6.0 years ago by
David Langenberger
11k
0
votes
0
replies
1.4k
views
News:
Introduction to Mixed (Hierarchical) models for biologists using R (IMBR01)
R
updated 12 months ago by
Ram
43k • written 6.1 years ago by
oliverhooker
▴ 60
0
votes
3
replies
1.4k
views
News:
:: FINAL CALL :: A Practical Introduction to NGS Data Analysis (Nov 29 - Dec 1, 2023 in Munich, Germany) - only 2 seats left
DNA-Seq
NGS
RNA-Seq
Workshop
6 months ago by
David Langenberger
11k
3
votes
0
replies
1.4k
views
News:
NIH Strategic Plan for Data Science
nih
data-science
updated 12 months ago by
Ram
43k • written 6.2 years ago by
GenoMax
142k
0
votes
0
replies
1.4k
views
News:
16S Microbial Metabarcoding
R
Metabarcoding
updated 11 months ago by
Ram
43k • written 5.6 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.4k
views
News:
Speciation Genomics Workshop
genome
snp
speciation
next-gen
updated 12 months ago by
Ram
43k • written 6.0 years ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
1.4k
views
News:
Free e-learning from EMBL-EBI
free-courses
EMBL
EBI
e-learning
updated 12 months ago by
Ram
43k • written 5.9 years ago by
natasha.sernova
★ 4.0k
2
votes
3
replies
1.4k
views
News:
Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction
dna-extraction
rna-seq
updated 11 months ago by
Ram
43k • written 5.7 years ago by
tpjurkowski
▴ 20
0
votes
0
replies
1.4k
views
News:
Hackathon on how to use biodata to improve health outcomes
disease
drugs
genomics
open-targets
updated 12 months ago by
Ram
43k • written 6.0 years ago by
Denise CS
★ 5.2k
2
votes
2
replies
1.4k
views
News:
GeNets: a unified web platform for network-based genomic analyses
networks
pathways
RNA-Seq
visualization
updated 12 months ago by
Ram
43k • written 5.9 years ago by
ivivek_ngs
★ 5.2k
3
votes
0
replies
1.4k
views
News:
Analysis of single cell RNA-seq data - Berlin 23 -27 March 2020
scRNA-seq
RNA-Seq
updated 11 months ago by
Ram
43k • written 4.9 years ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
1.4k
views
News:
Metagenomics course. 9-13 April 2018
omics
Metatranscriptomics
metagenomics
updated 12 months ago by
Ram
43k • written 6.3 years ago by
carlopecoraro2
★ 2.5k
4
votes
0
replies
1.4k
views
News:
ONLINE course - Metagenomics, metatranscriptomics, and multi'omics for microbial community studies
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 4.1 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.4k
views
News:
Workshop: RAD-seq data analysis (Berlin, 2-6 July 2018 )
RAD-seq
SNP
Stacks2.0
updated 12 months ago by
Ram
43k • written 6.0 years ago by
carlopecoraro2
★ 2.5k
1
vote
2
replies
1.4k
views
News:
Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling
rare-disease
dna-seq
strand-ngs
updated 12 months ago by
Ram
43k • written 6.2 years ago by
Genomics
▴ 70
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Recent Votes
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
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Recent Replies
Comment: constructing pangenome through psvcp
by
analyst
▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R
by
1769mkc
★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks
by
ATpoint
82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner
by
Joe
21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression?
by
Gordon Smyth
★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Table 1 o…
Comment: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object
by
Alex Reynolds
35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF)
by
aidangcruickshank
▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data?
by
Ngrin
• 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2
by
swbarnes2
14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot
by
LauferVA
4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
• 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
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