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529 results • Page
2 of 11
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News:
NCBI's ClinVar now accepting somatic variation data
variation
NCBI
somatic-variants
ClinVar
10 weeks ago by
PeterC_NCBI
▴ 410
1
vote
1
reply
303
views
News:
EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 10 weeks ago by
dr.eldeib89
• 0 • written 3 months ago by
EMBL Events
▴ 10
1
vote
0
replies
233
views
News:
Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow
pipeline
workshop
10 weeks ago by
David Langenberger
11k
0
votes
0
replies
185
views
News:
Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly
Galaxy
Genome-Annotation
updated 10 weeks ago by
Ram
44k • written 10 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
193
views
News:
Call for abstract: Quest for Orthologs meeting in Montreal
conference
phylogeny
comparativegenomics
orthology
evolution
10 weeks ago by
sina.majidian
▴ 20
1
vote
0
replies
187
views
News:
shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability
terminal
bash
11 weeks ago by
David Langenberger
11k
1
vote
1
reply
240
views
News:
Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser
IGB
updated 11 weeks ago by
Ram
44k • written 11 weeks ago by
IGB Helper
• 0
0
votes
0
replies
220
views
News:
Online course: Network Analysis in Systems Biology with R/Bioconductor
R
RNA-seq
Network-Analysis
Bioconductor
Systems-Biology
updated 11 weeks ago by
Ram
44k • written 11 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
253
views
News:
The 2024 Canadian Bioinformatics Workshops are here!
CBW
workshop
training
12 weeks ago by
bioinformatics.ca
• 0
0
votes
0
replies
197
views
News:
Live online course Data Manipulation with R Tidyverse, 3 and 5 of April
R
manipulation
tidyverse
data
12 weeks ago by
Sole
• 0
0
votes
0
replies
222
views
News:
Online course: Reproducibility in Bioinformatics
Docker
Singularity
WorkflowManagementSystems
Reproducibility
12 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
282
views
News:
Online course: Genome Assembly Using Oxford Nanopore Sequencing - 4 seats remaining
GenomeAssembly
Nanopore
longreads
3 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
260
views
News:
Webinar about scRNA-seq cell type prediction
scRNAseq
updated 3 months ago by
GenoMax
142k • written 3 months ago by
jenny
• 0
0
votes
0
replies
288
views
News:
Online course: Spatial Omics in R/Bioconductor
R
Spatial-Omics
Bioconductor
tidyverse
transcriptomics
updated 3 months ago by
Ram
44k • written 3 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
234
views
News:
Online course: Model-Based Demographic Inference from Population Genomics
Demographic-Inference
Population-Genomics
Demographic-Models
updated 3 months ago by
Ram
44k • written 3 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
213
views
News:
Online course: R/Bioconductor for Mass Spectrometry and Proteomics
R
Proteomics
Bioconductor
Mass-Spectrometry
updated 3 months ago by
Ram
44k • written 3 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
216
views
News:
Virtual Workshops with the UConn Computational Biology Core
Workshop
genomics
updated 3 months ago by
GenoMax
142k • written 3 months ago by
mia.nahom
▴ 10
0
votes
0
replies
205
views
News:
NGS Data Analysis Courses for Absolute Beginners
NGS
DNAseq
RNAseq
singlecellsequencing
DataAnalysis
3 months ago by
David Langenberger
11k
0
votes
0
replies
218
views
News:
Online course: Genome Assembly and Annotation
Annotation
Genome-Assembly
Nanopore
Pacbio
updated 3 months ago by
Ram
44k • written 3 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
201
views
News:
Online course: Computation Tumor Evolution
R
Cancer-Genomics
Tumor-Evolution
Genomics
updated 3 months ago by
Ram
44k • written 3 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
198
views
News:
Course live online Intro Bayesian Analyses, March 4-8, 2024
R
python
bayesian
3 months ago by
Sole
• 0
0
votes
1
reply
1.0k
views
News:
FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS
RNA-Seq
Workshop
3 months ago by
David Langenberger
11k
0
votes
0
replies
248
views
News:
Online course : Meta-Analysis in R
R
Meta-Analysis
Statistics
updated 3 months ago by
Ram
44k • written 3 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
213
views
News:
Cellosaurus release 48 is available
cell-line
biocuration
cellosaurus
knowledgebase
3 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
250
views
News:
Online course: Genome Assembly Using Oxford Nanopore Sequencing
Genome-Assembly
Nanopore
updated 3 months ago by
Ram
44k • written 3 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
272
views
News:
BLAST FASTA Files Will No Longer Be Available on the FTP Site Effective April 2024
NCBI
BLAST
3 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
256
views
News:
EMBL-EBI Training | Systems biology: from large datasets to biological insight
systems
4 months ago by
EMBL Events
▴ 10
0
votes
0
replies
224
views
News:
Online course - Sex Chromosome Evolution
Evolution
Genomics
Sex-Chromosome
updated 4 months ago by
Ram
44k • written 4 months ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
846
views
News:
LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis (February 28 - March 1, 2024)
NGS
Online-Workshop
updated 4 months ago by
Ram
44k • written 4 months ago by
David Langenberger
11k
7
votes
2
replies
1.2k
views
News:
NGS Data Analysis Workshops 2024
scRNA-seq
dna-seq
rna-seq
nextflow
4 months ago by
David Langenberger
11k
0
votes
0
replies
257
views
News:
Online course: Generalized Additive Models (GAMs) in R
R
Statistics
Gams
4 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
285
views
News:
Online course - Introduction to Python for biologists
Python
Programming
NGSData
4 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
225
views
News:
Online course - Introduction to Machine Learning in R for omics data
R
Omics
MachineLearning
StatisticalLearning
4 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
213
views
News:
Online course - Flow cytometry data analysis with R/Bioconductor
R
Flow-Cytometry
Bioconductor
updated 4 months ago by
Ram
44k • written 4 months ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
355
views
News:
Reminder: NCBI ClinVar XML update to accommodate somatic variants coming Jan 29, 2024
SNP
XML
ClinVar
NCBI
4 months ago by
PeterC_NCBI
▴ 410
4
votes
0
replies
228
views
News:
Transform Your Research with Our NGS Data Analysis Online Course!
DNAseq
NGS
Biologists
OnlineCourse
RNAseq
4 months ago by
David Langenberger
11k
0
votes
0
replies
269
views
News:
3rd edition of the Winter School in Bioinformatics - Online February 26 - March 1
genomics
reproducibility
phylogenomics
transcriptomics
4 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
594
views
News:
course - Reproducibility in Bioinformatics
Docker
Reproducibility
written 14 months ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
407
views
News:
Online Course - Genomic Prediction
Genomic-Prediction
Selective-Breeding
updated 4 months ago by
Ram
44k • written 4 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
298
views
News:
Flow cytometry data analysis with R/Bioconductor course
FlowCytometry
R
Bioconductor
5 months ago by
carlopecoraro2
★ 2.5k
2
votes
2
replies
558
views
News:
Unix and Shell Scripting for Bioinformatics course
Bash
Unix
Shell-Scripting
5 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
341
views
News:
Bayesian Data Analysis in R course
R
Bayesian-Statistics
updated 5 months ago by
Ram
44k • written 5 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
352
views
News:
Practical Hands-On Introduction to R course
R
Tidyverse
Data-Analysis
updated 5 months ago by
Ram
44k • written 5 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
315
views
News:
Landscape Genomics course at the EPFL in Lausanne, Switzerland
genomics
Landscape-Genomics
updated 5 months ago by
Ram
44k • written 5 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
306
views
News:
New version of ElasticBLAST (1.2.0) available from NCBI
ElasticBLAST
NCBI
BLAST
5 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
298
views
News:
Course. - Gene Set Enrichment Analysis in R/Bioconductor - ONLINE, 22-25 January
R
Gene-Set-Enrichment-Analysis
GSEA
Bioconductor
updated 5 months ago by
Ram
44k • written 5 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
320
views
News:
University of Connecticut Single Cell RNA-seq Workshop December 12-15, 2023
expression
singlecell
rnaseq
5 months ago by
mia.nahom
▴ 10
0
votes
0
replies
293
views
News:
Online course: Introduction to Python, February 12th-March 11th, 2024
python
courses
5 months ago by
Sole
• 0
0
votes
1
reply
403
views
News:
Course: Genome Assembly and Annotation
Biodiversity
Genome-Assembly
Genome-Annotation
Long-reads
updated 5 months ago by
Ram
44k • written 5 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
370
views
News:
GWAS course
R
GWAS
updated 5 months ago by
Ram
44k • written 6 months ago by
carlopecoraro2
★ 2.5k
529 results • Page
2 of 11
Recent Votes
Answer: ComplexHeatmap - How to change fontsize of rowAnnotation
Comment: Harmony integration group.by.var parameter
Answer: Harmony integration group.by.var parameter
A: Blast - Formatting Output
Answer: Why some SNP's allele frequencies in gnomAD are so different between v2 and v4?
Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
Why some SNP's allele frequencies in gnomAD are so different between v2 and v4?
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Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
• 0
This works. Thank you so so much!
Comment: Harmony integration group.by.var parameter
by
jared.andrews07
★ 17k
>I am not sure, but using "Sample_ID" might remove the differences between the conditions right ? More than likely, it'd at least impact t…
Comment: Harmony integration group.by.var parameter
by
Picasa
▴ 640
Thanks jared.andrews07 for your answer. So, you are suggesting to use only "Donor" in the integration? ```r RunHarmony(seu_obj, group.by.…
Comment: Single cell analysis: Unable to subset cells in seurat object using desired nFea
by
sc_analysis
• 0
I am not sure what should be the cut off. Looking at the vlnplot before subsetting i thought most of the cells are falling under 7500 nfeat…
Comment: How to calculate cell type frequency between two groups in single cell data
by
Sara
▴ 30
Thank you for your comment and sorry if this question might be so basic. How can I normalize the number of cells? If I am not wrong the i…
Comment: Bowtie 1.3.1 alignment error as array 21720,23124 produces sam bam files
by
Deepthi
• 0
I unzipped the fastq files to check whether reads are trimmed adapter or not. I have checked the quality control using fastqc they are go…
Comment: Mutation counts corrected by number of samples
by
Ram
44k
> I want to compare the number of mutations This comparison will give you literally no useful information.
Answer: How to scrape BioMart data from https://sorfs.ugent.be/ website
by
Pierre Lindenbaum
162k
something like: seq 1 100 4377380 | while read F ; do wget --no-check-certificate -O - "https://sorfs.ugent.be/database/micrope…
Answer: Harmony integration group.by.var parameter
by
jared.andrews07
★ 17k
The variability explained by the variables provided to `group.by.vars` is what Harmony will try to remove. Assuming you want to remove the …
Answer: Why some SNP's allele frequencies in gnomAD are so different between v2 and v4?
by
Jeremy Leipzig
22k
That SNP is in an HLA gene which has had a lot of attention and improvement over the years, ranging from kits to software to the reference …
Comment: Overlapping clusters for different biological conditions: Seurat, UMAP
by
Bastien Hervé
5.3k
What is the need of PBMC in your analysis ? If none, removing them from the beginning will allow your clusters to be more specific to your …
Answer: How to calculate cell type frequency between two groups in single cell data
by
Bastien Hervé
5.3k
I believe `sample_id` are your replicates in either `patient` or `control`. You can do it manually by normalizing the number of cells yo…
Answer: bfctools merge [E::hts_open_format] Failed to open file
by
j.f.akers
• 0
I think the program is trying to open a .vcf.gz.csi file rather than the actual data which is the .vcf.gz file, the csi file is not data, j…
Comment: LDhat lookup table
by
NÚRIA
• 0
Hi! Did you manage to fix this? I run convert successfully on 60 unphased diploid samples (1500bp), hence I used lktable available in LDh…
Comment: Trouble with PLINK's logistic regression analysis and covariatesTrouble with PLI
by
F110152169
• 0
It's Parkinson's disease. How do I get the right order?
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