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29 results • Page
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12
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News:
8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop
RNA-Seq
DNA-Seq
Illumina
27 days ago by
David Langenberger
11k
3
votes
0
replies
140
views
News:
Interested in Spatial Omics?
Bioconductor
Spatial-Omics
Spatial-Transcriptomics
updated 13 days ago by
Ram
43k • written 13 days ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
220
views
News:
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy
Generative-AI
scRNA
Machine-Learning
updated 10 days ago by
Ram
43k • written 10 days ago by
Claire Watson
▴ 60
2
votes
0
replies
134
views
News:
Online Course Introduction to Network Analysis and Modelling
Python
Network-Analysis
updated 25 days ago by
Ram
43k • written 25 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
131
views
News:
Online course: Genome Annotation
Genome-Assembly
RNA-seq
Genome-Annotation
updated 27 days ago by
Ram
43k • written 27 days ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
135
views
News:
Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM
Rlang
Rstats
Rproject
updated 25 days ago by
Ram
43k • written 25 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
123
views
News:
Course Functional Programming with R
Rstats
TScourses
Rproject
KeepLearning
Rlang
26 days ago by
Transmitting Science communication
▴ 70
1
vote
0
replies
140
views
News:
Online Live Course: Introduction to Machine Learning in R
Rstats
TScourses
Rlang
Rproject
updated 25 days ago by
Ram
43k • written 25 days ago by
Transmitting Science communication
▴ 70
1
vote
2
replies
1.1k
views
News:
The GDC Legacy Archive is retiring soon.
genomic-data-commons
tcga
gdc
2 days ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
189
views
News:
Landscape Genomics course in Switzerland
LFMM
Landscape-Genomics
Sambada
R
Local-Adaptation
4 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
192
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 18 days ago by
Ram
43k • written 18 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
145
views
News:
upcoming online statistical courses
Statistics
R
Data-Analysis
updated 15 days ago by
Ram
43k • written 16 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
106
views
News:
Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding
Programming
R
updated 4 days ago by
Ram
43k • written 4 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
117
views
News:
Online course: Genome Annotation
Genome-Assembly
Genome-Annotation
7 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
166
views
News:
Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy
Python
NumPy
updated 6 days ago by
Ram
43k • written 6 days ago by
Chakri
• 0
0
votes
0
replies
191
views
News:
Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop
RNA-seq
nextflow
DNA-seq
updated 20 days ago by
Ram
43k • written 20 days ago by
David Langenberger
11k
0
votes
0
replies
101
views
News:
Online course: DNA methylation
Pacbio
Nanopore
DnaMethylation
Evolution
14 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
135
views
News:
Cellosaurus release 49 is available
cell
biocuration
line
database
news
knowledgebase
4 days ago by
Amos Bairoch
▴ 120
0
votes
0
replies
130
views
News:
hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models
GLM
R
updated 12 days ago by
Ram
43k • written 13 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
171
views
News:
Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis
Statistics
R
updated 11 days ago by
Ram
43k • written 11 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
130
views
News:
Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis
Statistics
R
updated 6 days ago by
Ram
43k • written 6 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
197
views
News:
Online course: Meta-analysis in R
Meta-Analysis
R
updated 25 days ago by
Ram
43k • written 25 days ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
291
views
News:
FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq
variant-calling
RNA-seq
illumina
transcriptomics
6 days ago by
David Langenberger
11k
0
votes
1
reply
115
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
4 hours ago by
MICOS
• 0
0
votes
0
replies
92
views
News:
Online course: Bioinformatic analysis of transposable elements
GenomeAssembly
Transcriptomics
TransposableElements
ManualCuration
1 day ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
131
views
News:
Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics
vegan
R
updated 28 days ago by
Ram
43k • written 29 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
191
views
News:
Online course: Network Analysis in R
NetworkAnalyis
R
22 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
211
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 18 days ago by
Ram
43k • written 18 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
157
views
News:
Deadline Approaching: PETs for Public Health Challenge
privacy
public-health-challenge
updated 21 days ago by
Ram
43k • written 21 days ago by
polarise
▴ 380
29 results • Page
1 of 1
Recent Votes
Comment: Gene Specific coverage from WGS data
Answer: ATAC-Seq and RPKM
Answer: MSA and distance matrix in R
Comment: MSA and distance matrix in R
Comment: Which hg38 file?
Answer: Which hg38 file?
Answer: Where to get the following bed file?
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Recent Awards •
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Popular Question
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Omics data mining
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JACKY
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Recent Replies
Answer: What is the proper way to identify the cell types of scRNAseq cluster?
by
ATpoint
82k
I will say that the proper way is the one that confidently identifies your celltypes. > optimal number of marker genes to consider. T…
Comment: How to compute TPM normalized values for TCGA miRNA data?
by
swbarnes2
14k
When everything is the same size, correcting for size is pointless. It doesn't change the numbers much at all.
Comment: Understanding STAR output (Aligned.out.sam file)
by
swbarnes2
14k
What do the alignments look like in IGV?
Comment: HCL database download
by
sooni
▴ 20
I solved the problem! Thanks!
Comment: Gene Specific coverage from WGS data
by
Adyasha
• 0
Thank you, here I am giving you some example , suppose I have bam files . 1.bam 2.bam 3.bam 4.bam now I want to see Spike gene coverage in …
Answer: Bioinformatics Analyst - Laboratory Medicine and Pathology
by
Xiaofen
• 0
I'm having a problem and I can't find the button to post, how do you post?
Comment: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
by
MICOS
• 0
Contest question details: **To effectively address the accuracy and efficiency issues of clustering algorithms used for spatial transcript…
Comment: HCL database download
by
sooni
▴ 20
I would like to download top markers for each subpopulation data. Is there no way? It seems different from the DGE data.
Comment: Understanding STAR output (Aligned.out.sam file)
by
GenoMax
142k
Refer to SAM alignment format: https://samtools.github.io/hts-specs/SAMv1.pdf Check section 1.4.
Answer: Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genom
by
LChart
3.9k
Step 1: Go to TCGA in the GDC and open the Cohort Builder https://portal.gdc.cancer.gov/analysis_page?app=CohortBuilder&tab=general Step …
Comment: Where to get the following bed file?
by
GenoMax
142k
SeqCap kits are discontinued. If you don't find the said file your will need to email Roche Support per this page: https://sequencing.roche…
Answer: Where to get the following bed file?
by
LChart
3.9k
UCSC maintains a list of exome probe sets and targets. You could check there: https://hgdownload.soe.ucsc.edu/gbdb/hg19/exomeProbesets/
Comment: How to compute TPM normalized values for TCGA miRNA data?
by
Ngrin
• 0
Yes, I found some similar ideas on biostar repository. So you think the authors have done something wrong? And I should only consider CPM?
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
Chris Dean
▴ 390
It is difficult to answer how they were able to identify *S. hominis* without seeing the code or paper. To address your second question, i…
Comment: Problem with Seurat package in PercentageFeatureSet function
by
bk11
★ 2.4k
Did you check where the `features.tsv.gz` file had Gene IDs or Ensembl IDs?
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