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NGS pipeline analyses

Hi Biostars Users,

I am rookie in bio-informatics interested in undergoing NGS training to learn how to build NGS pipeline for whole exome sequencing analyses.

May you please guide me to find a suitable training program?

Best,
Kizuna

next-generation-sequencing
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updated by Ram Ram • written by Kizuna Kizuna

Thank you!

Do you have any information on-site training programs held in institutes like EBI? Broad institute? Sanger institute?

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updated by Ram Ram • written by Kizuna Kizuna

Sorry, I don't keep track of them but I am pretty sure that they offer variety of NGS training programs. If you search here on Biostars you may find such postings. For example, one such post is A: Upcoming Ngs Data Analysis Workshops 2014

Post it as a separate question if you need more help.

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updated by Ram Ram • written by Ashutosh Pandey Ashutosh Pandey

Tx David, however I am searching for trainings in WES.

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written by Kizuna Kizuna

Well, around 90% of the analyses are the same. But of course, the downstream analysis (everything after mapping) is a bit different. Perhaps we will offer WES workshops next time! :)

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written by David Langenberger David Langenberger

Then I count on you to keep me updated!

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updated by Ram Ram • written by Kizuna Kizuna

Sounds very interesting..

Many thanks, I will gladly download it and try it :)

I will let you know

kiz

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updated by Ram Ram • written by Kizuna Kizuna

3 answers

Perhaps one of out trainings might be of interest to you!

Check out http://www.ecseq.com/training.html

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written by David Langenberger David Langenberger

Hi Kizuna,

We, in Gabor Marths lab at Boston College, have an NGS tool and pipeline launcher that is simple to use and can perform a variety of different analyses with prebuilt pipelines. Customizing pipelines is straightforward and we are always available to help. Check out our site at http://gkno.me. The package is easy to download, install and run.

Good luck,
Alistair Ward

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updated by Ram Ram • written by alistairnward alistairnward

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