S. Cerescie (Yeast) Conserved Domain Sequence Retrieval
Kindly help me in finding the ideal database where I can find and download the yeast protein domain sequences for entire genome.
Thanks
conserved-domain
yeast
• 1,884 views
•
link
updated
by
Ram
•
written
by
ahmedakhokhar
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Unable to download bacterial protein sequences from NCBI using datasets CLI (DOMAIN is not a valid …
written by Rohan •Hi everyone, I’m trying to download bacterial protein sequences from NCBI using the `datasets` command-line tool, but I keep getting an error I don’t understand. …
-
How to parse all the Zn-binding protein sequences from MetalPDB?
written by KumarI would like to download all the zinc-binding protein sequences from [MetalPDB][1] database. But, I could not find any option there in the website to …
-
Downloading all Helix-turn-helix motif containing protein from bacteria
written by saadleeshehreenHi, I want to download all the bacterial protein containing helix-turn-helix domain. I did search in pfam database. https://pfam.xfam.org/search/keyword?query=Hth Here are 605 results. Each of …
-
DNA sequences encoding conserved protein domains
written by jmeier •Given a DNA locus, I want to know whether that DNA sequence encodes a conserved protein domain. Something like the NCBI's CDD would work, but …
-
How to calculate the standalone interproscan output functionwise or domainwise?
written by mirza<p>Hello friends,</p> <p>I used standalone Interproscan5.14-53.0-64 for functional annotation of proteins predicted in my assembled genome. It works wonderfully and is quick. However, since I …
-
Retrieve protein domain coordinates given a protein/transcript ID
written by Lalla •Hi! I have a list of ensembl transcript and protein IDs and I want to find the coordinates of the protein domains of these proteins. …
-
Yeast genome SK1 strain
written by Varun GuptaHi Everyone, I am interested in getting the genomic sequence of SK1 strain of YEAST. Where can I get the fasta file for it. I …
-
Problems about gene family identification and characterization
written by Ginsea ChenHello everyone I tried to use some known sequences as query database to search whole members of special gene family in whole genome database through …
-
protein domain download
written by siyu •<p>where can I download the protein domain included in a gene set? can you help me</p>
-
Alternate Transcripts Paralogs
written by aj123<p>Hello,</p> <p>I have a few doubts related to how the best way is to go about finding these:</p> <ol> <li>Finding unique regions when you compare …