Thank you. It looks very promising.
Building a custom genomic database
Hello,
We generate in-house genome assemblies, annotation files for different microorganisms from time to time. I want to create a genomic database consisting of all the assemblies and annotations with the scope of adding future genomes. The database should be searchable to find specific genes, regions etc. I am thinking of creating a MySQL database, but then other users need to access MySQL and write commands to find out what they need. This is what I want to avoid.
Could anybody suggest any experiences of building custom genomic databases with an UI? Any tool recommendation would be great.
Thank you.
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create a RDF-based database with a SPARQL endpoint and a few examples, just like uniprot: https://sparql.uniprot.org/sparql