Molecular docking with Autodock
I want to use Autodock Tool to perform Docking but am unable to find the Autogrid.exe file. Autogrid is required while docking. Kindly help.
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Hi - you'll need to provide more information on your problem and system before anyone can help you.
Sir I am working on molecular Docking for that I have receptor protein and Ligand structure in PDB format. for that I was using Autodock . Problem is that Autodock need Autogrid file to run docking. But Autogrid is not available in the website to download. Sir i want to know from where I can get Autogrid or if any other appropriate tools which are freely available for molecular docking. please help.
There are numerous protein-protein or protein-ligand docking tools available, and even these can come in different styles. Fold and dock, rigid docking, flexible docking, etc...
Generally, these tools are built for use in a unix environment (and a few web services). Here is a review from 2022 with many of the top tools discussed. EDIT: Here is a review specifically for protein ligand docking.
Finding alternatives to autodock was as simple as googling. I'm not familiar with autodock, so can't help with dependencies.
Thanks It helped