1000G Reference Panel Hg38 Michigan Imputation Server
Hello,
I am trying to align my data with the 1000G data set, and my data is aligned under the hg38 build. I am unable to find a reference panel that would align under the "perl cmd" for this website (https://www.chg.ox.ac.uk/~wrayner/tools/), and I only find the hg37 build. Is there one that is readily available or do I have to compute my own? Although the website does have a hg38 version, under the TOPMed Reference panel, I ideally want to utilize the 1000G Reference list.
1 answer
Here is a phased panel for the 1000Genomes using hg38
or
• 0 views
•
link
written
by
Raony Guimarães
Log in to answer this question.
More posts like this
-
Pre-imputation checks using 1000G data (hg19) for a hg38 VCF
written by guoweidora •
-
Imputation advice
written by kl •
-
How to get the reference panel sites for TOPMed hg37 and 38
written by sinhas •
-
Discrepancy between genotype and reference genome build - issue with strand flips
written by dam4l
-
TopMed freeze8 reference panel download
written by dtzhu337 •
-
Infinium MethylationEPIC Annotation under hg38
written by Molin •
-
1000 genomes project reference panel - GRCh38
written by GiantSilverSoy •
-
bcf tools fixref error
written by kstafford32 •
-
Reference genome for CIViC data
written by haiying.kong
-
IMPUTE2- Map file for custom reference panel
written by john.michel.rouhana •
Performing pre-imputation QC of your data using hg38 TOPMed Reference Panel and later using 1KG reference (hg38) for imputation in Michigan Imputation Server should not be any problem.
I will look into this. Thank you.