scRNA data analysis , how to compare pattern in multiple samples
Hello Everyone .
I am new to single cell data .
I have 3 files in a folder
Sample5D_barcodes
Sample5D_features
Sample5D_matrix.mtx
I have other 2 samples in different two folders .
How can I compare these 3 sample's scRNA data to find distinct cell type cluster for each patient. How can I modify this command to do this in R.
Please help.
Thank you
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Can you please ask a precise question rather than posting a wall of code? What is the main problem you have, what did you try? Did you follow established protocols such as the Seurat vignettes and the Biocondutor single-cell guide (https://bioconductor.org/books/release/OSCA/)?