Bcftools
Hello ! I am trying to use bcftools to filter my vcf files. Honestly I don't really understand the syntax rules and the usage of commands. I have looked through the manual, it's still confusing to me. I wanted to ask if it is possible to filter my file so that samples included have filter PASS and their funcrefgene column has value "exonic ". Could you please help?
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Ram
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kamila.temirkhanova •
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kamila.temirkhanova •
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"bcftools" is not a correct title. Edit your title please.
show us what you tried. And we don't know what is the "funcrefgene" column.
I'm assuming OP is referring to the ANNOVAR
INFO/Func.refGenefield.kamila, please look at the
-i(include) option and sample expressions in thebcftools viewsubcommand.