More posts like this
-
Errors from REST and Browser for specific HOGS?
written by Andrew •I am trying to retrieve HOG D0679329 but keep getting timeout errors from REST api (python) and incomplete loading from the browser. Does anyone have …
-
Unable to fetch human protein sequence through UniProt API
written by anasjamshedI am using this Python script to fetch human protein sequences, but it's not fetching any sequence: ```py import requests def fetch_protein_sequence_from_uniprot(protein_name): #Declaring UniProt API …
-
How to retrieve protein sequence data for humano in UniProt?
written by carlos_marchiHi, I tried to retrieve protein sequence data from UniProt site, however, I haven't downloaded the data because is huge files ( about 130GB). I …
-
uniprot variant classification DB retireve
written by cocchi.e89I'm working on some variants (exome, human) annotation. I'd like to retrieve the UNIPROT info about the variant (e.g. "disease" when known as disease causing …
-
How to download the sequences of a gene of all species?
written by sunyeping •Dear everyone, How do you download the sequences of a gene of all species? For example, dUTPase is an enzyme existing in almost all organisms. …
-
How to specify columns in Uniprot batch query from Uniprot IDs?
written by SolowarsDear all, My question is relatively similar to https://www.biostars.org/p/90271/, in which someone tries to retrieve fasta sequences from Uniprot from a list of Uniprot Protein …
-
GO Terms retrieval
written by brianbtarimo •I've a list of VectorBase proteins IDs for Anopheles gambiae. I would like to retrieve GO terms for these IDs using UniProt. Can someone please …
-
GO terms retrieval
written by brianbtarimo •I've a list of VectorBase proteins IDs for Anopheles gambian. I would like to retrieve GO terms for these IDs using UniProt. Can someone please …
-
Obtaining only the aligned regions in BLAST
written by arya •Hello I have a subject nucleotide sequence which I would like to align to various complete genomes. I am using standalone blastn for the same. …
-
How to retrieve record from Uniprot with BioPerl
written by tpapamitrou •Hello I am new here and I face a problem about retrieving data from Uniprot. I use bioperl and I want to retrieve a specific …
show the command, show the files