From the above you should get 13 column output where the last column displays aligned subject sequence. If you're on Windows, use -outfmt "6 std sseq" instead of -outfmt '6 std sseq'

Assuming your BLAST output goes into a file called blastout.tsv and you used -outfmt '6 std sseq' , then

cut -f 2,13 blastout.tsv | awk '{printf(">%s\n%s\n", $1, $2); }' > blastout.aligned.fasta

should do the trick (not on Windows, unless you're using Cygwin or something similar).