This is a test version of Biostars. For the public version, visit https://www.biostars.org.
using ClustalW output to BLASTn search against the nucleotide (nr/nt) collections

Hello there

Please someone tell me, how I can employ the resulted multiple alignments of ClustalW in BLASTn search against the nucleotide (nr/nt) collections?

Imagine I have this output of ClustalW

CLUSTAL 2.1 multiple sequence alignment


q_[1938_1979].1      ACCTTGAAGCAAGAAAGGGGAAGTGGAGACAAAACTGATTAA 42
t_[1512_1553].2      ACCAAAAAAGAAGAAGGAGGAGATGGAGAAAAAAAAGACAAA 42
                     ***   **  ***** * ***  ****** ****  **  **

Now I want to use this in BLASTn search against the nucleotide (nr/nt) collections. How can I?

blast
• 2,261 views • link
updated by Ram Ram • written by zizigolu zizigolu

1 answer

Give a look to MView

• 0 views • link
written by Antonio R. Franco Antonio R. Franco

Log in to answer this question.

More posts like this