Pangenome using Orthofinder · Biostar

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Pangenome using Orthofinder

Hi,

I am working on bacterial genomics. I ran the OrthoFinder program with default parameters for >200 bacterial genomes. How can I use the results derived from OrthoFinder to perform the Pangenome analysis. I want to calculate the total genes, core genes, accessory genes and unique genes present in the genomes. Can someone suggest how to carry out this analysis?

orthofinder pangenome bacteria

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updated 9 months ago by GenoMax

• written 2.9 years ago by kirankumareripogu •

1 answer

Edit Nov 2025: Current awsome list here https://github.com/colindaven/awesome-pangenomes

Came across these: https://github.com/PlantDr430/FunFinder_Pangenome

https://github.com/neherlab/pan-genome-analysis/blob/master/advanced_options.md

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written 2.9 years ago by GenoMax

Thank you GenoMax for your reply and suggesting the links for the pangenome analysis.

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written 2.9 years ago by kirankumareripogu •

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