This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Filtering of mCs before downstream DMR analysis

Hi,

I am working with a WGBS dataset and have done alignment and methylation calling with Bismark and DMR analysis with metilene.

So far I have only filtered on read depth before DMR calling, but I was wondering if it is necessary to perform some test (binomial e.g.) to identify true mCs before DMR calling?

wgbs dmr metilene bismark

0 answers

No answers yet.

Log in to answer this question.