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Differential Methylation Analysis

Hi,

I've just started working in this area and am looking for some pointers.

What software packages does the community use for the analysis of differentially methylated regions from WGBS data?

I used Bismark to perform the alignment and the methylation calling steps.

Thanks!

wgbs methylation
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updated by Ram Ram • written by enricoferrero enricoferrero

2 answers

You can also use Bsmap and methratio tools.

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written by Evgeniia Golovina Evgeniia Golovina

Hi, we have developed a new software for de novo identification of DMRs from various BS-Seq data including WGBS. Maybe it is useful for you. http://fame.edbc.org/smart/ Best wishes! :)

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written by hongbo919 • hongbo919

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