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Differential Methylation Analysis
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23 months ago
enricoferrero • 770
United Kingdom

Hi,

I've just started working in this area and am looking for some pointers.

What software packages does the community use for the analysis of differentially methylated regions from WGBS data?

I used Bismark to perform the alignment and the methylation calling steps.

Thanks!

methylation wgbs • 2.5k views
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15 months ago
New Zealand

You can also use Bsmap and methratio tools.

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2.7 years ago
hongbo919 • 20

Hi, we have developed a new software for de novo identification of DMRs from various BS-Seq data including WGBS. Maybe it is useful for you. http://fame.edbc.org/smart/ Best wishes! :)

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