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Read depth extraction

Hello. I wanted to extract the read depth information from my vcf file. Can anyone share their her/his experience in doing this. My vcf format is like this (see below)

Thank you very much!enter image description here

snps genomics
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updated by Ram Ram • written by vlip • vlip

bcftools query is an option. See examples here.

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written by iraun iraun

1 answer 

bcftools query -f '[%CHROM %POS %SAMPLE %DP\n]' in.vcf
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written by Pierre Lindenbaum Pierre Lindenbaum

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