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Calculate coverage per gene

Hi everyone,

I have bed file, bam file of human exome data and i wish to calculate the coverage per gene. Are there any suggestions on how i should calculate the coverage per gene?

coverage gene
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written by anii • anii

1 answer

I like Mosdepth for coverage related issues.

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written by iraun iraun

I have used the mosdepth but it in the output in showing me the coverage of whole exons of genes. so how i can combine the coverage and get the coverage by gene wise not an exon wise?

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written by anii • anii

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