How to get transcript coverage from Salmon output?
Hey!
I'm interested in getting the transcript coverage from Salmon quantification output. Is there a way to do this? Would RSeQC work?
• 1,133 views
•
link
updated
by
Istvan Albert
•
written
by
unawaz •
•
written
by
unawaz •
1 answer
You would probably need to generate pseudo-bams and then process those with the transcript integrity programs.
• 0 views
•
link
written
by
Istvan Albert
Log in to answer this question.
More posts like this
-
identifying 3'utrs for multiple transcripts of genes from a summarized experiment.
written by RNAseqer
-
Question regarding transcript quantification with hybrid seq
written by shinyjj •
-
Can we use exon- counts to calculate coverage?
written by unawaz •
-
Is it possible to use salmon alevin tool for total rna seq samples?
written by PK •
-
Good QC Package (RSeQC or alternative) for Salmon mapping/quantification results?
written by skjw1029 •
-
Getting libType without running quantification with Salmon
written by compuTE
-
How does Salmon handle reads that map to multiple locations that each have full coverage?
written by cameron.holman •
-
how do normalization for transcript length
written by lkianmehr
-
Average Insert Size When Using Transcript Quantification Tools Such as Salmon?
written by Dru Zod •
-
How to retain transcripts from blastx output at a given coverage?
written by unawaz •
