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how to get pfam id of proteins belonging to a particular family along with sequences in that family?

Hello, i am a newbie in bioinformatics I am trying to get protein sequences of a particular species e.g homo sapiens along with the pfam id of the family to which the particular sequences belong from the interpro website. i found that i have to click on the name of the proteins which directs me to another page which shows the family id of the protein. Is there a faster or easy way to do this? Thanks

pfam protein id interpro sequence
• 2,169 views • link
written by max • max

use the data in the download section ?

$ wget -qO - "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/protein2ipr.dat.gz" | gunzip -c | grep -w IPR000074 | head
A0A011TNG6  IPR000074   Apolipoprotein A/E  PF01442 355 534
A0A011TNG6  IPR000074   Apolipoprotein A/E  PF01442 527 711
A0A011TNG6  IPR000074   Apolipoprotein A/E  PF01442 716 871
A0A011TNG6  IPR000074   Apolipoprotein A/E  PF01442 788 922
A0A011TNG6  IPR000074   Apolipoprotein A/E  PF01442 806 987
A0A011TNG6  IPR000074   Apolipoprotein A/E  PF01442 929 1059
A0A011TNG6  IPR000074   Apolipoprotein A/E  PF01442 1065    1186
A0A011TNG6  IPR000074   Apolipoprotein A/E  PF01442 1259    1407
A0A011UZW7  IPR000074   Apolipoprotein A/E  PF01442 295 436
A0A011UZW7  IPR000074   Apolipoprotein A/E  PF01442 382 586
• 0 views • link
written by Pierre Lindenbaum Pierre Lindenbaum

1 answer

Visit: https://www.uniprot.org/uniprotkb?query=(taxonomy_id:9606)

Click on customize columns. Search with keyword pfam and check the box once found. Add remove other columns as needed. Click on Download to download locally.

If you want only reviewed proteins the select that link (circled).

pfam

• 0 views • link
written by GenoMax GenoMax

Thanks .Is there any way to get pfam ids along with the protein family names?

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written by max • max

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