which tool to use for Transposon structure finding CENSOR or repeat masker ??
I have a nucleotide sequence as a query. I need to align the respective organisms' reference genomes and identify if there is an inverted repeat around the query and genome-mapped sequence. I have seen some papers using CENSOR or repeat masker to do that. I do not know how to add CENSOR or repeat masker to a local blast. if anyone can help me kindly let me know.
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manaswiniparija3 •
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