I have three bacterial draft genomes (sequenced by illumina and ABI solid sequencing platform), belongs to same species (Average Nucleotide Identify value is 99.9% for each other). I would like to merge/combine those three genomes into singe genome, so that I could gain the missing regions of each other genome. Thus would help me to represent the combined single genome for my Pan-genome analysis. Please let me know, is it possible to do, if it so please help me.
Thank you in advance.