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molly77
molly77
Reputation:
10
Joined:
8.8 years ago
Last seen:
5.3 years ago
Location:
United States
Latest posts by user
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Comment: Comment: how to modify some tiplabs in ggtree?
written by molly77 • molly77
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0 replies
753 views
Plot Categorical Traits on Terminal Nodes of Tree using Character Matrix
charactermatrix phylogeny phylogenetics mesquite
written by molly77 • molly77
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1 reply
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Comment: C: Append TPM value to sequence header in FASTA file
written by molly77 • molly77
0 votes
6 replies
1.9K views
Append TPM value to sequence header in FASTA file
rna-seq fasta tpm transcripts linux
updated by JC JC • written by molly77 • molly77
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1.1K views
tBLASTn - How do I turn all repetitive masking off??
rna-seq blast tblastn assembly
written by molly77 • molly77
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0 replies
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Comment: C: tBLASTn - Warning: Could not calculate ungapped Karlin-Altschul parameters due t
written by molly77 • molly77
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2 replies
5.0K views
tBLASTn - Warning: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options
blast transcriptome software error alignment
written by molly77 • molly77
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Answer: A: Can I compare TPM values for a transcript across different transcriptome assembl
written by molly77 • molly77
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0 replies
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Comment: C: Can I compare TPM values for a transcript across different transcriptome assembl
written by molly77 • molly77
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10 replies
5.9K views
Can I compare TPM values for a transcript across different transcriptome assemblies?
rna-seq gene expression tpm transcript
written by molly77 • molly77
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0 replies
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Comment: C: Generate nucleotide multiple sequence alignment from protein alignment?
written by molly77 • molly77
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2 replies
2.2K views
Generate nucleotide multiple sequence alignment from protein alignment?
multiple-sequence-alignment
updated by Ram Ram • written by molly77 • molly77
1 vote
1 reply
2.0K views
Best method to assemble low-abundance transcripts?
assembly rna-seq illumina transcriptomics
updated by Matteo Schiavinato Matteo Schiavinato • written by molly77 • molly77
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Comment: C: Samtools stats output "reads mapped and paired"
updated by Pierre Lindenbaum Pierre Lindenbaum • written by molly77 • molly77
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2 replies
381 views
Samtools stats output "reads mapped and paired"
samtools stats metrics
updated by Pierre Lindenbaum Pierre Lindenbaum • written by molly77 • molly77
0 votes
1 reply
1.8K views
Why does my genome annotation file contain only one type of feature? (i.e. mol_type=genomic DNA)
gff genome annotation
written by molly77 • molly77
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1 reply
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Comment: A: Get cds using bedtools
written by molly77 • molly77
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0 replies
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Comment: C: Get cds using bedtools
written by molly77 • molly77
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1 reply
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Comment: C: Program that will extract all CDS from protein-coding genes in a genome fasta fi
written by molly77 • molly77
0 votes
3 replies
4.0K views
Program that will extract all CDS from protein-coding genes in a genome fasta file (with gff file)
genome gene cds
updated by Kevin Blighe Kevin Blighe • written by molly77 • molly77
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