Using DANPOS2 to determine nucleosome positions
Hi everyone.
I want to determine the nucleosome positions from ENCODE data (ENCFF000VME).
The file is a signal file in Bigwig format - so there is no way to find the positions by just looking at the file.
I found that some people use the DANPOS2 in order to find the nucleosome positions from MNase-seq data.
However it's still unclear to me which option to use given the Bigwig format and how, and also how to verify the results.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Fold change vs signal p-value in ENCODE ATAC-seq
written by barcagro •
-
Define enhancer regions
written by Faiza •
-
How does the ENCODE project define "default data"?
written by biock •
-
Comparison of ChIP-seq tracks from two cell lines using FC over control (ENCODE data)
written by erica.fary •
-
MNAse-Seq Dataset for Different Cancer Types
written by rohitsatyam102
-
Assigning nucleosome peaks to transcription factor bound locations(obtained by ChIP-seq)
written by sshibin •
-
Create genomic features/tracks from ChIP-seq data?
written by ejwright •
-
Well Positioned Nucleosome Arrays And Active Promoter
written by chjiao3456 •
-
Peak Calling For Non-Chip Data?
written by vedtopkar •
-
Act Convert Wig/Bam/Common_Format Into Signal Track (Signal Track)
written by Sander Timmer
