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Variant annotation in fishes

Hello everyone

Today I am analyzing SNP type variants in the species pimelodus yuma. Now what I want to do is use variant effect predictor to check the effect of the found SNPs.

Could someone recommend which predictors I can use in fish?

variant-annotation

if you have a GTF/GFF3 associated to your fish, you can use almost any classical predictor: VEP, snpeff, bcftools csq etc...

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