This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Variant effect predictor in ictalurus punctatus

Hello everyone

I performed a VEP analysis today using a catfish reference genome and my VCFs are from the species Pimmelodus Yuma. The problem is that the predictors did not give me any results in the missense variants. Is this normal?

Here are the pictures

enter image description here

enter image description here

varianteffectpredictor vep
• 1,133 views • link
updated by barslmn • barslmn • written by Hayler Edu • Hayler Edu

I think VEP uses precalculated values for most of these tools and I don't think they are precalculated for your organism.

• 0 views • link
written by barslmn • barslmn

Thanks! Do you think that is better to use each predictor in the UNIX terminal?

• 0 views • link
written by Hayler Edu • Hayler Edu

0 answers

No answers yet.

Log in to answer this question.

More posts like this