Processed RNA seq data publicly available
4 answers
The recount project is also useful for yoinking uniformly processed stuff.
• 0 views
•
link
written
by
jared.andrews07
GEO is a huge repository of datasets, many of which are RNA-seq. All datasets provide processed data although the format is up to the depositer. My Lab always uploads count matrices, for example
• 0 views
•
link
written
by
Gordon Smyth
• 0 views
•
link
written
by
Zhilong Jia
Log in to answer this question.
More posts like this
-
RNA-seq datasets with raw read counts for two group comparison
written by Ngrin •
-
predict gain/ loss of function from mutation
written by Nemo •
-
using gatk haplotypecaller for variants extraction
written by Nemo •
-
circular RNA analysis workflow
written by aminijavad4 •
-
research options avalaible using rna-seq datasets for an undergraduate
written by ashwing.kofficial •
-
Connecting LncRNAs and Pathways
written by Manu Madhavan •
-
should non-protein-coding rna(e.g. lncRNA) be removed in RNA-Seq differential expression analysis
written by hellocita •
-
RNA spike-ins: Their applications and bioinformatics methods for the analysis
written by Javad
-
Forum: Reuse of publicly available datasets
written by sanathoi •
-
Using bioconductor GEOmetadb to find RNA-seq datasets
written by maureen.pittman •
