How to create Newick file from a VCF file or BAM files to input to RAxML? · Biostar

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How to create Newick file from a VCF file or BAM files to input to RAxML?

Hi! I'm new to creating phylogenetic trees. I currently have a VCF file from doing the variant calling. I'm now trying to make a phylogenetic tree and implement bootstrapping using RAxML. However, I noticed the input for RAxML needed is a Newick file (.nwk). How would I make a Newick file from my VCF file? Or how does the workflow generally go?

phylogram newick vcf population genetics

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updated 3.8 years ago by Jeremy Leipzig

• written 3.8 years ago by Noé •

Multi-Sample Vcf To Phylogenetic Tree.

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written 3.8 years ago by Jeremy Leipzig

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